RNA id: TU21458


Basic Information

Item Value
RNA id TU21458
length 422
lncRNA type intronic
GC content 0.36
exon number 1
gene id G14535
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22475781 ~ 22476202 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGGTACGTCTGATTCTTTGGCCATTTAGGATTTAAGTGGTGTGTTTTTCACTAAATGAGGGCTTTTTCATGAGGCTAACAGCTACTAACTGTGGGGAAATAAAGGTGTCAGGACTGAATAAATCAGCAGAGAGTGCTGGTTCTGTTCTGTTCGTGTCAGCCTGCCCCGTTTGCTTTGTTGCTTTTGTCGGATGAGAACAGCCTTTAAGGCACTAAAAGAGACTCTTTGCTGCACTATTGCTTTCAATAAACGctctatattattttatacactaAGGACAGTCAGTTATTTTGCACAGTTACTGTACTATTTAAATTACTGTATTCTGTCACATCAGAATCATATGATGCCTATTGAGTGATCATAATCTAGGCTTCACTGCTACGATGTTCAGATCACATGACCATCCTTACTATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21455 lncRNA upstream 3178 22467860 ~ 22472603 (+) True G14532
TU21457 lncRNA upstream 11928 22463034 ~ 22463853 (+) False LOC122327302
TU21389 lncRNA upstream 560753 21913520 ~ 21915028 (+) False G14484
TU21388 lncRNA upstream 560814 21913520 ~ 21914967 (+) True G14484
TU21376 lncRNA upstream 580303 21895171 ~ 21895478 (+) True G14477
TU21471 lncRNA downstream 35969 22512171 ~ 22513937 (+) True G14540
TU21474 lncRNA downstream 46209 22522411 ~ 22576292 (+) True G14541
TU21472 lncRNA downstream 98721 22574923 ~ 22576292 (+) False G14541
TU21473 lncRNA downstream 98721 22574923 ~ 22586250 (+) False G14541
TU21475 lncRNA downstream 100821 22577023 ~ 22578223 (+) True G14542
XM_043218532.1 mRNA upstream 149609 22134354 ~ 22326172 (+) True LOC122324242
XM_043263870.1 mRNA upstream 370680 22044868 ~ 22105101 (+) True gpc1b
XM_043253209.1 mRNA upstream 449694 21929297 ~ 22026087 (+) True gpc5c
XM_043253218.1 mRNA upstream 449694 21929297 ~ 22026087 (+) False gpc5c
XM_043222546.1 mRNA upstream 564112 21896676 ~ 21911669 (+) True fndc7rs1
XM_043260236.1 mRNA downstream 39203 22515405 ~ 22549867 (+) False epb41l3b
XM_043260198.1 mRNA downstream 39374 22515576 ~ 22549867 (+) True epb41l3b
XM_043260190.1 mRNA downstream 45048 22521250 ~ 22549867 (+) False epb41l3b
XM_043260227.1 mRNA downstream 45048 22521250 ~ 22549867 (+) False epb41l3b
XM_043260211.1 mRNA downstream 45048 22521250 ~ 22549867 (+) False epb41l3b
unassigned_transcript_253 other upstream 546962 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 614339 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 759494 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 993463 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 1114073 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 215049 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1068904 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1260849 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1459719 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1607636 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile