RNA id: TU21485


Basic Information

Item Value
RNA id TU21485
length 1401
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G14549
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22643795 ~ 22650843 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtcagtgtgtgtgtgtgtgtgtgtgtcagtgtatgtgtgtgtgtcagtgtgtgtgtgtgtgtgtgtgtgtgtcagtgagaGAGACTGATGTAATAATATCATTTTCTGTCTAGTATTCTGTATGATTAAAGAGACTGAGAAAGAGTTTTCTTCCCAGGACTTTGTGTGTGAGCTCCATCACTGAATCTGAAATCAGCCGTGAAGCGGTCAGCATTCAGGTCAGCCTCTGCCTCCTCATCCCTGCTATCAGTTATGTCTCCTTCTTATATTTAAAGGCGTCTTGATTTGATTGTGCTTCTTTCAGTCTCTTTGTTTGATCTGCTCCGATGCTGATCTTTCAGACACTAAACACACTGCAGAAGAAGCGTGTTAAGAACGATTGCAAGTAAAACAAAGTCGgtcttttttcacatttaattcaatgcttCTCTGTGGTTATTTGATGGCATTTATCAAAACAGTCTCTACGTTGTTAGGGTCGACACGAAACAGACGTGCATGATAAGAGTCACTCGTCAGGAGTTAGACACAAAGGCTAAGGTTTCTGAGAAATCTCCGTGTAAGTGCTGTCAGAACCGTTAGGACGGAAACAATGACCCCGGTAACGTTCAGCAGAGTCACTAAAGCAGAAGACAATCACAGGCTTCTTCTCAAAGGCACAGAAACTCAACGCTGGATTAGGGATCATCCCGGTGCTGCTGTTTAGATGATCACTGAACATCAggacttgtgtgtgtttgtgtataacaTCACTGCTTGCtagttttaatacaaaaatgccATCTTTCATATTAGATGAGCTCATAGAAGCATTTAaagtatacaatatatatatatatgtgaagtATATAAAAgagcatgattttactcaataatCCGTTTTCATTCAGTATTAAAGACTCAGTGCttgattttcttctttaatgCGAAGGTTCTGCTTCATCAATGCTttcctgtgtttctgtgttcatTTCCAAAGCTCTTGAAGTTTGATTTCAGCTTCAGATGCATGCTATTGTGCAACGAATGAAAAACGggaaactttacattttactatGTATGTTCCGTATTCTATGATATAAGCTCATTGGGATTATAAATacgtttaaatattaataaataaaaagctagcAGATATAAATAGTCTTCCTATTCAGCTCATGCTGTGTTAATAATCTTTTTCATATTATTGGTCTGATATTATGAGATATTAATGATTTCAGTGCCTGATTTTAAGgacttttttgtgcttttatgcGTTCAAATATGCATAGTCTTTCAAATAATATAAGCTGATGAAATAAAGCgattaaaatgagttttaaagtataaaaatcacattattttaaaagtatttAAAATACTGTCaatagacagaaaaaaaaaacgagatatatttt

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21473 lncRNA upstream 57545 22574923 ~ 22586250 (+) False G14541
TU21475 lncRNA upstream 65572 22577023 ~ 22578223 (+) True G14542
TU21474 lncRNA upstream 67503 22522411 ~ 22576292 (+) True G14541
TU21472 lncRNA upstream 67503 22574923 ~ 22576292 (+) False G14541
TU21471 lncRNA upstream 129858 22512171 ~ 22513937 (+) True G14540
TU21543 lncRNA downstream 91584 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA downstream 125397 22776240 ~ 22777003 (+) True G14553
XR_006252487.1 lncRNA downstream 135878 22786721 ~ 22802473 (+) True LOC122357472
TU21556 lncRNA downstream 162423 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA downstream 162572 22813415 ~ 22829492 (+) False LOC122328317
XM_043223690.1 mRNA upstream 3201 22638886 ~ 22640594 (+) True foxl2b
XM_043217616.1 mRNA upstream 42341 22592599 ~ 22601454 (+) True LOC122323627
XM_043256244.1 mRNA upstream 71795 22562512 ~ 22572000 (+) True LOC122357060
XM_043260257.1 mRNA upstream 93928 22521251 ~ 22549867 (+) False epb41l3b
XM_043223672.1 mRNA downstream 8221 22659064 ~ 22665912 (+) True pnp5b
XM_043223680.1 mRNA downstream 8240 22659083 ~ 22665912 (+) False pnp5b
XM_043223664.1 mRNA downstream 8253 22659096 ~ 22665912 (+) False pnp5b
XM_043223631.1 mRNA downstream 16469 22667312 ~ 22674275 (+) False LOC122327931
XM_043223641.1 mRNA downstream 16469 22667312 ~ 22674272 (+) False LOC122327931
unassigned_transcript_253 other upstream 714976 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 782353 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 927508 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1161477 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 1282087 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 40408 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 894263 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1086208 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1285078 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1432995 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile