RNA id: XM_043223631.1


Basic Information

Item Value
RNA id XM_043223631.1
length 1668
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC122327931
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22633529 ~ 22674275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAATCTGTTGCATCGTCACTGAGGTCGTGTCCAGTTTCGTTTCTGCTGAAGTCCTGCCTCTTACAGTAAAAGGGTCCCACATCATTACAAACTCACAGAGAGACCAGAGAAACGAAACGAAACTGCACGACATGTCCGAGCAAGGAGCGAGTCGTTACGGGCAGCGGCCCGGCTCAAACGAGGGAAACGGAGATGTTTGCTCTCCCTCTCAAACTCAAGGTTCAGCTGGCGGCGATCCGCTCGGAGAAAACCAGCTGAGGCTGGTCCTGCTGGGAAAAACCGGTGCGGGGAAAAGTGCGACGGGAAACAGCATCCTGGGAAACAGATGCTTTGATGAAGATCTGAGCATGGGTTCGGTCACTAAAGAGAGTAAGAAAGCGTGTGCTGCGGTGGAAGGACGAGAGCTTCTTCTCATTGACACGCCTGGGTTTTTTGACACCgatttaaaagaagaagaattacAAAAAGAAGCAGTTCATTGCCTGACCTTGTGTGCTCCCGGTCCTCATGTGTTTCTGATCGTTATACCGATAGAACGATATACAGAGGAGCAGCAACGCACCGTACACATGATTCTGGAGATGTTCAGTGGAGACATCAGCGATCACAGCATCCTGGTCTTCTCCCACGCCGACAGACTTAACGGAGAACCCATCGAAAGGTTCGTGTCCAGACAAAATGCTAAAGTTCAAGAGCTCGTGGAGAGATTCGGGAGGCGTTTCGTGGCCTTTGACAACACAAACCCTGCAAACCGAGTACAAGTGAGACGGCTCCTGCAGAAAGCGACGCAGCTGCTGGTCAGGAATAATTACGGTCACTTCGTTAATGAAGTTACTGAGGCGGTGCAGGCCGCAAAGAGCATCATGGAAGAAAAAGCGGCCGAGAGAGCGAGGAAAATAAAGGAGGAGGTCAAGAATGCGGCCGATGTCCGTCGGCGTGCGCTTATCTCTTACATGAACGAAGAGAGGCGAGAAGCTGATCAGAGAAGGAAGCGCGTTCAGCGCAGGATCGATCAGATTCAGACGGATGTGATGAAGGAGGAGCAGAACGTGCGGCCGATTCCGGAAAGACTGAGACGCTTCGCTGCGTCTCTGAGGGCCGAGCTGGAGAACATGCGTCGACTGGAGCAGAGATGcatggaggaggagagagagagaaaggaaagagaagagagagaataCACCGACCTGGACGTCTGGATGCAAGAAGAGGAGCAGAGGAAACTGAGCGAAGCAGGACAGGCCAGTCCTCTTTCTCCTGATGATCATAAAAGGCTGATTATGCTGACCATGTTTCTGCTGGGGATCGGGGCTTCGTTCGCGCCCGCTCTCTTACCGCTGCTGTTCCCCGCAGCTCCAGCGGTGGAAACCGGGCTGGCGGCGGGGCTTTTGTCCAAACTGTTGGCTGCGGAAGGGTGGGGTTTGGTTTGGGTGCTGGCTGGAGTGGCCAAAGCTGCGGTCCTGACCCGCTGCTCCATCCAGTGACGTGGACGACCCAGCGGAGACGTTTGAGCGGTCGTCACGAGATACAGAAGAGGTTTATGAATCAGACAGAAGTAGTTCTGATGAAGTTTCAGTGACGAGGAGGTTTAGGGTCAGAGAGaaaatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgcctgtctgagtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21485 lncRNA upstream 16469 22643795 ~ 22650843 (+) True G14549
TU21473 lncRNA upstream 81062 22574923 ~ 22586250 (+) False G14541
TU21475 lncRNA upstream 89089 22577023 ~ 22578223 (+) True G14542
TU21474 lncRNA upstream 91020 22522411 ~ 22576292 (+) True G14541
TU21543 lncRNA downstream 68152 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA downstream 101965 22776240 ~ 22777003 (+) True G14553
XR_006252487.1 lncRNA downstream 112446 22786721 ~ 22802473 (+) True LOC122357472
TU21556 lncRNA downstream 138991 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA downstream 139140 22813415 ~ 22829492 (+) False LOC122328317
XM_043223672.1 mRNA upstream 1400 22659064 ~ 22665912 (+) True pnp5b
XM_043223680.1 mRNA upstream 1400 22659083 ~ 22665912 (+) False pnp5b
XM_043223664.1 mRNA upstream 1400 22659096 ~ 22665912 (+) False pnp5b
XM_043223690.1 mRNA upstream 26718 22638886 ~ 22640594 (+) True foxl2b
XM_043217616.1 mRNA upstream 65858 22592599 ~ 22601454 (+) True LOC122323627
XM_043259985.1 mRNA downstream 16924 22691199 ~ 22695216 (+) False fcer1gl
XM_043259982.1 mRNA downstream 21806 22696081 ~ 22717815 (+) True nectin4b
XM_043216708.1 mRNA downstream 56399 22730674 ~ 22751530 (+) False si:dkeyp-68b7.12
XM_043216715.1 mRNA downstream 56649 22730924 ~ 22751530 (+) True si:dkeyp-68b7.12
XM_043216725.1 mRNA downstream 57249 22731524 ~ 22751530 (+) False si:dkeyp-68b7.12
unassigned_transcript_253 other upstream 738493 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 805870 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 951025 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1184994 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 1305604 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 16976 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 870831 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1062776 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1261646 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1409563 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile