RNA id: TU21556


Basic Information

Item Value
RNA id TU21556
length 2140
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122328317
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22813266 ~ 22829545 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttattatattatttttatttatttatttttattttataatatttttttaaatacttaaaaataaaatggcaaaacttacattattttatttatatttatacaaaataaaatgttaatattttaaattgtaaaatgaaaatattttagtaatgtttttataagatAATACGAGAACACCtcaaaataacttatttatattgtttatggCGGGATCTTGTGAGAAGACTAAGAATGCATGTGTGGACGTTTTGTCAATCTTTGCTCTGAATTCTGTTTGGGTCTGTTTGTTTCAGGTCAGTCCTCATCTTCTGAATTAATGAGCTGAGTGTTTCTGCGCAAGACGTCCGAAAGCCTGAGTTCCTCTGAAAATCAATGGATCTGCGGATGGACTGCAGTTCTctgctgctttctttttttgctctgtgtgtgtgataaagcgtctctctttctccaggTTTGAGTGATTGTGCTGTGAAATCCCATCCATATCTGAGCTCGAATCAAACACCTGATGGAGGATTGACCGGCcgagcgagagtgtgtatctCCTGTAACCCCGGCCTCTTTTATTGATTTCTTCTCTCAGGTTGATTATAAACGATGGCTCTCCTCGCAGCTGTCTTCACCGGATCCTCCGGCCCATCCGTCTCCATAGAAGTTATTTCCCATAATGCCTCTGTCCCTCGGAGCGCGAGCCGCTGACGGAGACGGAGAGCGGCCGGCCGCGGGAAGGACATTTTTCTCTTTCGGTTTCCGGGCAGATGTCATCATCGGTTCATCAAAGGCTGTCGCTGAAAGATTGATTGACGGCTTCATCCACCAATCAGAGACGGGTTTCACAGACTAGTCCGGACTGAACTCTTTTAAGCGACGGATCTTAAAACAGGAGTGTCAACAAGCTCCCGGCTGCTTCAGGAAGAGAGCGTTTCAGCAGCTCAGCAGACGCAGAGAATCAAGACGCTAACTGGGACTGTCCCGAGGCGCCGGGCTTAGAGAGGCTTGATTGAGTGAAGAAAAAACCCCACAGCGGCTTGGAAGGATGCTCAACCCCCATCTCCCCATTAAAACTAGAAAAGAGCCCACACGTGTCCATCGGTTCCGAGTGTCGAATCCAGGCTGTTCTAATGATGGCCTGCAGCGCTGGATTACTCCGAAGCGGCTGGAGCTTTCTGTGATGAATGCTGAGGAGCACACAGATGAAAGTCAATAGTGCAGGCTGTTATTGTGTGTCGGAGCTGAGAGAGGAGCTTCAATGCGACCGTGACCTATATTTACTGCTCGAGTGCGTCTCGCTCGTGTTacgctgagagagagagagagagagagccatcTGGTAAACCGCAGGCTTCacatccatcacacacacacacacacacacacacactgcatgtcAACCTAGTTAAGGCAAAACACCACGGGGTGaaacatttaaaggaacagtccgCTGCAAATCAACTCAAACCTCAGATAatcaggtttggagaaatgtgtcgCTGCGTCAGTGTTttagcaatggatgtgaatgggtgccgtcacaatccacagcactccagacAAAAAGTGTGCGTTTAAAGGGCTCACGTGATGCCATTTGACCTTTCCTTTCTCTCTAAAGCCTCAAAGATTCAAGTttaaaaaccaaagagatattgtttataaaagttgtgactcgtttaaacacgcccccacttctctacatcacagagtggtttatttgcataactccgcccaaatgtttactcacagaaagaaggcggagctattattctgtgTGTAATGTCGCCACGGGAACGtatgaaatgttacatttgagGGGACTTTAGAAGTCAGCTGACAAACGTTCTTAAAACATTCTGGAAAGGTTCTCAAAGACGAAAACAACAAGTATTAATggaacatttttataaagttcGCTGGCCTGCTATAATGATGTTATAACATTATGATCTTTTTCCCcctgaaaacatttttggtttaatgttattacttgtttttcaaaaataacgTTCCcataatgtttgtaaaatgataGAATGGAATGTTTCCTTAACGtttgaagaaacatttaaacgttttttagaataaaatatcacatactgtcattagaaataaaatgctgtatataaattggaattaat

Function

GO:

id name namespace
GO:0032400 melanosome localization biological_process
GO:0051875 pigment granule localization biological_process
GO:0051648 vesicle localization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252487.1 lncRNA upstream 10793 22786721 ~ 22802473 (+) True LOC122357472
TU21543 lncRNA upstream 27253 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA upstream 36263 22776240 ~ 22777003 (+) True G14553
TU21520 lncRNA upstream 142472 22633529 ~ 22670794 (+) False LOC122327931
TU21518 lncRNA upstream 142472 22643403 ~ 22670794 (+) False LOC122327931
TU21569 lncRNA downstream 18368 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA downstream 30639 22860184 ~ 22879465 (+) False G14589
TU21584 lncRNA downstream 173659 23003204 ~ 23005138 (+) False LOC122324535
TU21587 lncRNA downstream 197235 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 199622 23029167 ~ 23029879 (+) True G14607
XM_043219140.1 mRNA upstream 28420 22780823 ~ 22784846 (+) True sf3a2
XM_043220650.1 mRNA upstream 39510 22770549 ~ 22773756 (+) True tpgs1
XM_043224502.1 mRNA upstream 55593 22752753 ~ 22757673 (+) True si:dkeyp-68b7.5
XM_043224512.1 mRNA upstream 55593 22752756 ~ 22757673 (+) False si:dkeyp-68b7.5
XM_043216725.1 mRNA upstream 61736 22731524 ~ 22751530 (+) False si:dkeyp-68b7.12
XM_043223952.1 mRNA downstream 3523 22833068 ~ 22870972 (+) True LOC122328301
XM_043222610.1 mRNA downstream 96768 22926313 ~ 22937828 (+) True pias4b
XM_043219179.1 mRNA downstream 109242 22938787 ~ 22946858 (+) True map2k2b
XM_043264291.1 mRNA downstream 129441 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA downstream 129442 22958987 ~ 22998516 (+) False tcf3a
TU21525 other upstream 117936 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 884447 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 951824 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1096979 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1330948 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 715561 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 907506 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1106376 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1254293 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1663893 24493438 ~ 24499685 (+) True G15065

Expression Profile