RNA id: XR_006247781.1


Basic Information

Item Value
RNA id XR_006247781.1
length 1938
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC122328317
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22813266 ~ 22829545 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taatgtttttataagatAATACGAGAACACCtcaaaataacttatttatattgtttatggCGGGATCTTGTGAGAAGACTAAGAATGCATGTGTGGACGTTTTGTCAATCTTTGCTCTGAATTCTGTTTGGGTCTGTTTGTTTCAGGTCAGTCCTCATCTTCTGAATTAATGAGCTGAGTGTTTCTGCGCAAGACGTCCGAAAGCCTGAGTTCCTCTGAAAATCAATGGATCTGCGGATGGACTGCAGTTCTctgctgctttctttttttgctctgtgtgtgtgataaagcgtctctctttctccaggTTTGAGTGATTGTGCTGTGAAATCCCATCCATATCTGAGCTCGAATCAAACACCTGATGGAGGATTGACCGGCcgagcgagagtgtgtatctCCTGTAACCCCGGCCTCTTTTATTGATTTCTTCTCTCAGGTTGATTATAAACGATGGCTCTCCTCGCAGCTGTCTTCACCGGATCCTCCGGCCCATCCGTCTCCATAGAAGTTATTTCCCATAATGCCTCTGTCCCTCGGAGCGCGAGCCGCTGACGGAGACGGAGAGCGGCCGGCCGCGGGAAGGACATTTTTCTCTTTCGGTTTCCGGGCAGATGTCATCATCGGTTCATCAAAGGCTGTCGCTGAAAGATTGATTGACGGCTTCATCCACCAATCAGAGACGGGTTTCACAGACTAGTCCGGACTGAACTCTTTTAAGCGACGGATCTTAAAACAGGAGTGTCAACAAGCTCCCGGCTGCTTCAGGAAGAGAGCGTTTCAGCAGCTCAGCAGACGCAGAGAATCAAGACGCTAACTGGGACTGTCCCGAGGCGCCGGGCTTAGAGAGGCTTGATTGAGTGAAGAAAAAACCCCACAGCGGCTTGGAAGGATGCTCAACCCCCATCTCCCCATTAAAACTAGAAAAGAGCCCACACGTGTCCATCGGTTCCGAGTGTCGAATCCAGGCTGTTCTAATGATGGCCTGCAGCGCTGGATTACTCCGAAGCGGCTGGAGCTTTCTGTGATGAATGCTGAGGAGCACACAGATGAAAGTCAATAGTGCAGGCTGTTATTGTGTGTCGGAGCTGAGAGAGGAGCTTCAATGCGACCGTGACCTATATTTACTGCTCGAGTGCGTCTCGCTCGTGTTacgctgagagagagagagagagagagccatcTGGTAAACCGCAGGCTTCacatccatcacacacacacacacacacacacacactgcatgtcAACCTAGTTAAGGCAAAACACCACGGGGTGaaacatttaaaggaacagtccgCTGCAAATCAACTCAAACCTCAGATAatcaggtttggagaaatgtgtcgCTGCGTCAGTGTTttagcaatggatgtgaatgggtgccgtcacaatccacagcactccagacAAAAAGTGTGCGTTTAAAGGGCTCACGTGATGCCATTTGACCTTTCCTTTCTCTCTAAAGCCTCAAAGATTCAAGTttaaaaaccaaagagatattgtttataaaagttgtgactcgtttaaacacgcccccacttctctacatcacagagtggtttatttgcataactccgcccaaatgtttactcacagaaagaaggcggagctattattctgtgTGTAATGTCGCCACGGGAACGtatgaaatgttacatttgagGGGACTTTAGAAGTCAGCTGACAAACGTTCTTAAAACATTCTGGAAAGGTTCTCAAAGACGAAAACAACAAGTATTAATggaacatttttataaagttcGCTGGCCTGCTATAATGATGTTATAACATTATGATCTTTTTCCCcctgaaaacatttttggtttaatgttattacttgtttttcaaaaataacgTTCCcataatgtttgtaaaatgataGAATGGAATGTTTCCTTAACGtttgaagaaacatttaaacgttttttagaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252487.1 lncRNA upstream 10942 22786721 ~ 22802473 (+) True LOC122357472
TU21543 lncRNA upstream 27402 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA upstream 36412 22776240 ~ 22777003 (+) True G14553
TU21518 lncRNA upstream 142621 22643403 ~ 22670794 (+) False LOC122327931
TU21569 lncRNA downstream 18421 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA downstream 30692 22860184 ~ 22879465 (+) False G14589
TU21584 lncRNA downstream 173712 23003204 ~ 23005138 (+) False LOC122324535
TU21587 lncRNA downstream 197288 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 199675 23029167 ~ 23029879 (+) True G14607
XM_043219140.1 mRNA upstream 28569 22780823 ~ 22784846 (+) True sf3a2
XM_043220650.1 mRNA upstream 39659 22770549 ~ 22773756 (+) True tpgs1
XM_043224502.1 mRNA upstream 55742 22752753 ~ 22757673 (+) True si:dkeyp-68b7.5
XM_043224512.1 mRNA upstream 55742 22752756 ~ 22757673 (+) False si:dkeyp-68b7.5
XM_043216725.1 mRNA upstream 61885 22731524 ~ 22751530 (+) False si:dkeyp-68b7.12
XM_043223952.1 mRNA downstream 3576 22833068 ~ 22870972 (+) True LOC122328301
XM_043222610.1 mRNA downstream 96821 22926313 ~ 22937828 (+) True pias4b
XM_043219179.1 mRNA downstream 109295 22938787 ~ 22946858 (+) True map2k2b
XM_043264291.1 mRNA downstream 129494 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA downstream 129495 22958987 ~ 22998516 (+) False tcf3a
TU21525 other upstream 118085 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 884596 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 951973 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1097128 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1331097 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 715614 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 907559 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1106429 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1254346 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1663946 24493438 ~ 24499685 (+) True G15065

Expression Profile