RNA id: XM_043219049.1


Basic Information

Item Value
RNA id XM_043219049.1
length 637
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122324535
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23003165 ~ 23005254 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAagacttttaatttgtaaacGTCGCTCGGTACGTGACGCCGCTTCCGCAGTTTGCCGCGCGTTTCCTGTGCTCGTTCTGCTCTTCACACACGTCCGATCATGTTGGGCAAAATAATCGGTCAGAAATACGTGTCTATCGCGAGAACATGGGTTCCCACGCTCGCCGTCTGGGGTGGAGCTGGAGGCGTAGCTCTCGTTCACTTCACCGACTGGAGGATCATCTTGGACTACGTGCCGTACATCAACGGAAAGTTCAAGAAGGACGATTAGATCAAGTCTTGCTGTGGACGGGCTGAAGATGGAGATGTTTGTCAGTGCCGGAGAAGAAGACCTCTAGTGAATCATCACTGCTAATGaacaatgtgtatttatttcgGAGCGTTCAATTCATTCATCCCTCGTGAAAGGTCTCACGATCAAAATCGAATGATTATAAAGATCATGTATGTAACGCCGGAGTGTTTTCTGTGCTTTGTCGTTTCTTTCCACTGAATCCTCATGGAATAAATACTCTCTAATATTCTGTTATAGAGAACGTCACGGTGGACCTCAActcttctttttaattttgttcatcTGTTCAGTCGTAGGTTACTGGTGATgcttgttaataaataaaagaaaatgaatctgA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21569 lncRNA upstream 123700 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA upstream 123700 22860184 ~ 22879465 (+) False G14589
TU21556 lncRNA upstream 173620 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA upstream 173673 22813415 ~ 22829492 (+) False LOC122328317
XR_006252487.1 lncRNA upstream 200692 22786721 ~ 22802473 (+) True LOC122357472
TU21587 lncRNA downstream 21526 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 23913 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 41379 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 152844 23158098 ~ 23179131 (+) True G14772
TU21843 lncRNA downstream 174191 23179445 ~ 23179755 (+) True G14778
XM_043264291.1 mRNA upstream 4649 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA upstream 4649 22958987 ~ 22998516 (+) False tcf3a
XM_043264283.1 mRNA upstream 4649 22958988 ~ 22998516 (+) False tcf3a
XM_043264265.1 mRNA upstream 4649 22958989 ~ 22998516 (+) True tcf3a
XM_043264295.1 mRNA upstream 4649 22958989 ~ 22998516 (+) False tcf3a
XM_043219036.1 mRNA downstream 643 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA downstream 673 23005927 ~ 23016480 (+) True mbd3a
XM_043220303.1 mRNA downstream 13103 23018357 ~ 23025395 (+) True LOC122325295
XM_043222658.1 mRNA downstream 244938 23250192 ~ 23260474 (+) True LOC122327352
XM_043222059.1 mRNA downstream 419440 23424694 ~ 23442701 (+) True wu:fb63a08
TU21525 other upstream 307835 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1074346 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1141723 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1286878 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1520847 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 539852 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 731797 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 930667 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1078584 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1488184 24493438 ~ 24499685 (+) True G15065

Expression Profile