RNA id: TU21587


Basic Information

Item Value
RNA id TU21587
length 1435
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G14605
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23026780 ~ 23028239 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACGCAAATAATCGACCAAAAAACGAGTAAATTGAATAATTCCTAATATGTAGTAATGTTTTCCCCACAGCAAGGACTGAACAATATGACGATAAAGAATATGCAGAAACGTTGCTTGATCGTTATTGTTTTAATAGGAAGCAAATGCTGCAGTAATCCACGATCATCCTCGTTAAGAACAATCAACAtggttaaaaatgaaattagaaACGTTCTCGGTATAAAAACACGCGCTCATGCGACGTTCACAAGCTCTTCTTTTGGAAACTCAACAGTGAAGTCAATAGTCGGTAAGTGGCAGCTTAACATCGAGGTcttcccatcatgcactggTTTACTGAGAGACGGGCAGCACTGCAGCATCATGCACGCATGCATACGATTCTTCATGCCCGCTTGTGCTtcagcgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgcgatgTCAAAGGCTCGTGTGAATCGACATTCGATGGCTGCGTTGCGTTTGGTTTCGAAGGAAACTGAGCAGcgattaaaatttttttttaaagctaaaaaaacaaacaaacatgaaacgAGTAGCACGATGTCAGCCGTAAAGTCACTTCAAACGTACAAAAACGAACGAAAAATAATTCGttacactttttacatttaaaaaagaaatatgggtcaaagacgaaaaagggtttaagcataaaaacaagtgattttttGCTCAATTTACCCacttgtcaggcatatttacagcaaaaatcaatttaaagatgaatgattttcaacccaaatactaattagttgtaatttaatttatttttttaaactgccaCTATCTCAGGTTTTACCCGCTTGtctttttgctcatttaaaacaatgcaacTCAACATGCTTGcttattatttgatatattttaatatgcacagGTCAGAATAAGCCTGgttgcatgtttttacattaaatattgttatgCCGAgtgacaatgtaacattattacaATCAAATTTTGACAGTTTATCCTCCAAAAACTTACTTGAGACCTTAAACATGGACACTTTTAATGCGCTTTCTATTGacataaaaatcacttttaacgTCTttgacctatatatatatatatatatatatatatatatatatatatatgtatgtaattatttttaagttgtgTGATGCTGTAACATTGTTTCAAACCtcgaaatgaaaataaaaacatattaaaaaaaaaacaaaataataaaatatatgacatCACCtgtaaaagtcatttcagaagtGGTGCAAAGTTATAagacttaaacttaaaaattaaatattaataaatatatgaaaataaatgttcaaattcCGTTTTTAAACGTGACATCAGAATCAGCACAAAAtcatgaaacttaaaaaaataataataaaaacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21584 lncRNA upstream 21642 23003204 ~ 23005138 (+) False LOC122324535
TU21569 lncRNA upstream 147315 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA upstream 147315 22860184 ~ 22879465 (+) False G14589
TU21556 lncRNA upstream 197235 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA upstream 197288 22813415 ~ 22829492 (+) False LOC122328317
TU21589 lncRNA downstream 928 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 18394 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 129859 23158098 ~ 23179131 (+) True G14772
TU21843 lncRNA downstream 151206 23179445 ~ 23179755 (+) True G14778
TU21844 lncRNA downstream 152492 23180731 ~ 23181157 (+) True G14779
XM_043220303.1 mRNA upstream 1385 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 10300 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA upstream 10300 23005927 ~ 23016480 (+) True mbd3a
XM_043219049.1 mRNA upstream 21526 23003165 ~ 23005254 (+) True LOC122324535
XM_043264291.1 mRNA upstream 28264 22958986 ~ 22998516 (+) False tcf3a
XM_043222658.1 mRNA downstream 221953 23250192 ~ 23260474 (+) True LOC122327352
XM_043222059.1 mRNA downstream 396455 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043253712.1 mRNA downstream 502531 23530770 ~ 23533357 (+) True scg2b
XM_043252984.1 mRNA downstream 535525 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 544859 23573098 ~ 23624866 (+) False mbnl1
TU21525 other upstream 331450 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1097961 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1165338 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1310493 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1544462 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 516867 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 708812 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 907682 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1055599 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1465199 24493438 ~ 24499685 (+) True G15065

Expression Profile