RNA id: TU21843


Basic Information

Item Value
RNA id TU21843
length 311
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G14778
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23179445 ~ 23179755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAATGTGGCAACCAATAGAATGCCACAGATGCCGTCTAcaaatcttaaattgtatttaacctGGAAACCTTATCCTTGAAAAGCCTCTTGATTACTGCACAGTATGTTTCGTCGGTGAGGGATGTGATGAGGCCTTCTGCAAATGTTTGATAATTGGTAAACAGATGATTAATTTGGCCTTATAAGCCGTGCATAAAATAAGAGACATAATGCAATTTTGATAcaggtttttgttgttaaaatgaatgactttctATGTATAGAACATATACATAGTTcggcacacaaacaaaaattaaaagcactgtTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21837 lncRNA upstream 314 23158098 ~ 23179131 (+) True G14772
TU21593 lncRNA upstream 129473 23046633 ~ 23049972 (+) True G14611
TU21589 lncRNA upstream 149566 23029167 ~ 23029879 (+) True G14607
TU21587 lncRNA upstream 151206 23026780 ~ 23028239 (+) True G14605
TU21584 lncRNA upstream 174307 23003204 ~ 23005138 (+) False LOC122324535
TU21844 lncRNA downstream 976 23180731 ~ 23181157 (+) True G14779
TU21979 lncRNA downstream 370850 23550605 ~ 23553233 (+) True G14832
TU21987 lncRNA downstream 378494 23558249 ~ 23562352 (+) True G14837
XR_006252160.1 lncRNA downstream 462708 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 463257 23643012 ~ 23643550 (+) False LOC122355031
XM_043220303.1 mRNA upstream 154050 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 162965 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA upstream 162965 23005927 ~ 23016480 (+) True mbd3a
XM_043219049.1 mRNA upstream 174191 23003165 ~ 23005254 (+) True LOC122324535
XM_043264295.1 mRNA upstream 180929 22958989 ~ 22998516 (+) False tcf3a
XM_043222658.1 mRNA downstream 70437 23250192 ~ 23260474 (+) True LOC122327352
XM_043222059.1 mRNA downstream 244939 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043253712.1 mRNA downstream 351015 23530770 ~ 23533357 (+) True scg2b
XM_043252984.1 mRNA downstream 384009 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 393343 23573098 ~ 23624866 (+) False mbnl1
TU21525 other upstream 484115 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1250626 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1318003 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1463158 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1697127 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 365351 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 557296 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 756166 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 904083 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1313683 24493438 ~ 24499685 (+) True G15065

Expression Profile