RNA id: TU21844


Basic Information

Item Value
RNA id TU21844
length 427
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G14779
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23180731 ~ 23181157 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACTTCCATGTCattgtgagtttaacactttgCAACATTCACTTATAACCGTGTTCTTATGTGCACAGAAATGGTTCTTACACAAAATTCTTGCCCTATTCTTCTCAAAAGGTACGCATGTATATTTGCTCTTACTATCTTATAATGTTAATAGATCCAGATTATTCTACATAAAAGTCCCTAAAATGAGCAATTAGCATAATTAGTGCCCTAACCATCTCCatataaatggcttttaaacacaaaataaagacttttatttgggcctaaaaatacatttttatgcaaagcCAATGCCAGATCTAAAatacatcaattttttttacgcTAAAACACTTTTGGGTCCCTCAACTGTTCAAATTTCCAACTTTTCGGCTTACACCATTTCATGTTTCTAAGGCCACCAGGACTgatttttacatacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21843 lncRNA upstream 976 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 1600 23158098 ~ 23179131 (+) True G14772
TU21593 lncRNA upstream 130759 23046633 ~ 23049972 (+) True G14611
TU21589 lncRNA upstream 150852 23029167 ~ 23029879 (+) True G14607
TU21587 lncRNA upstream 152492 23026780 ~ 23028239 (+) True G14605
TU21979 lncRNA downstream 369448 23550605 ~ 23553233 (+) True G14832
TU21987 lncRNA downstream 377092 23558249 ~ 23562352 (+) True G14837
XR_006252160.1 lncRNA downstream 461306 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 461855 23643012 ~ 23643550 (+) False LOC122355031
TU22015 lncRNA downstream 487406 23668563 ~ 23683398 (+) True G14850
XM_043220303.1 mRNA upstream 155336 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 164251 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA upstream 164251 23005927 ~ 23016480 (+) True mbd3a
XM_043219049.1 mRNA upstream 175477 23003165 ~ 23005254 (+) True LOC122324535
XM_043264295.1 mRNA upstream 182215 22958989 ~ 22998516 (+) False tcf3a
XM_043222658.1 mRNA downstream 69035 23250192 ~ 23260474 (+) True LOC122327352
XM_043222059.1 mRNA downstream 243537 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043253712.1 mRNA downstream 349613 23530770 ~ 23533357 (+) True scg2b
XM_043252984.1 mRNA downstream 382607 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 391941 23573098 ~ 23624866 (+) False mbnl1
TU21525 other upstream 485401 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1251912 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1319289 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1464444 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1698413 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 363949 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 555894 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 754764 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 902681 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1312281 24493438 ~ 24499685 (+) True G15065

Expression Profile