RNA id: TU21973



Basic Information


Item Value
RNA id TU21973
length 845
RNA type TUCP
GC content 0.54
exon number 5
gene id G14831
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23545106 ~ 23547974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGTGTTTATGTTCTGACTAAATGTCTGATTCCACTGCTGGAGAAGAGCAGGGACCCCCGAGTTATCACGGTGTCATCTGGAGGGATGCTGGTACAGAAACTCATCACGGATGACctgcagacagagagagctcCGCTTGACGGTTCCATGGTATATGCACAAAACAAGaggCAGCAGGTAGTGATGACAGAGGTCTGGGCGAAAGCAAATCCCAAAGTTCATTTCTCTCATGATGCACCCTGGGTGGGCTGACACACCAGCGGTTGCCAAGGCGATGCCTCAGTTCCATCAGATGATGCGTGATCGCCTGCGTTCGGCGGAGCAGGGAGCCGATACGGTCGTCTGGCTCGCCGCGTCACGCGCCGCCGCTGCGCTGCACAGCGGCCTTTTCTTCCAAGaTCGACAGCCGGTTTTAACACACCTGCCCCTGGCTTGGACGCACAGCTCTCGGCGGGACGCCAAAGCGTTCATGGGCCGGCTGGAGACTTTGGCGATGGCTGTCAAACCCTCAGAGTGAGATATTACACATAGAGCATGTCAGATAACTGAGAGGTTTGATGGTGTGTAGTACTAAAACACCATTCATACCATCTGTAACAAATAATGATATATGAAGCTTTTCTCTACAACTCTAACTGCTAAATAATCACACAGAAGCTAAAGCTGGTCTTAAAAGAGTGAAACAGGATGTTtaaccaaaaaatataaataaatgtagaatgaAATAAATCCTACCTTAACTGGATTAGACCGTCTCCATATTGTTGAGTTTGTAATCATTTGTGAAAACTATCTCCCTTTCATCCATTTGAtcaaagattaaataaaataaacctgtttTAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21844 lncRNA upstream 363949 23180731 ~ 23181157 (+) True G14779
TU21843 lncRNA upstream 365351 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 365975 23158098 ~ 23179131 (+) True G14772
TU21593 lncRNA upstream 495134 23046633 ~ 23049972 (+) True G14611
TU21589 lncRNA upstream 515227 23029167 ~ 23029879 (+) True G14607
TU21979 lncRNA downstream 2631 23550605 ~ 23553233 (+) True G14832
TU21987 lncRNA downstream 10275 23558249 ~ 23562352 (+) True G14837
XR_006252160.1 lncRNA downstream 94489 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 95038 23643012 ~ 23643550 (+) False LOC122355031
TU22015 lncRNA downstream 120589 23668563 ~ 23683398 (+) True G14850
XM_043253712.1 mRNA upstream 11749 23530770 ~ 23533357 (+) True scg2b
XM_043222059.1 mRNA upstream 102405 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043222658.1 mRNA upstream 284632 23250192 ~ 23260474 (+) True LOC122327352
XM_043220303.1 mRNA upstream 519711 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 528626 23005897 ~ 23016480 (+) False mbd3a
XM_043252984.1 mRNA downstream 15790 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 25124 23573098 ~ 23624866 (+) False mbnl1
XM_043252985.1 mRNA downstream 28134 23576108 ~ 23624866 (+) False mbnl1
XM_043252983.1 mRNA downstream 36237 23584211 ~ 23624866 (+) True mbnl1
XM_043252981.1 mRNA downstream 36237 23584211 ~ 23624866 (+) False mbnl1
TU21525 other upstream 849776 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1616287 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1683664 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1828819 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 2062788 21481676 ~ 21482318 (+) False LOC122354659
unassigned_transcript_256 other downstream 189077 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 387947 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 535864 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 945464 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1493455 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile