RNA id: TU21979


Basic Information

Item Value
RNA id TU21979
length 1596
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G14832
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23550605 ~ 23553233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAcgttttttattgaatttttttgtcttatttccGTAGCCACGTATAGGCTGTTTTGTTAGggtttttaataattctgcCTTTTATAcagtattgaaaaaaaaacaacaacatgtgcAGTGCATTCACATTTTCCCAAGGGATTCTTTTCATTTGATCTCTACGAGGGTAAAACGGTGAAGAGACTGAAGCTGGATCCATTCATAGCTGAGATTCTCATAAGAGTGGGAGTggtctaattaaaaataatctacAACACAATTATGGATTTCTTAGTTTGCTTCCTGATAATTTTCCCGATTGTATGTTTTATGATTTCTCGGTTCGCTTTTCCTTTAAATGAAGTCCGCTACCCAGAGTTcatcttttgtttaaaaggaaCTTCCCAGTCCATGCGAAAAGCAGTCCggaatcttttttatttttcctgtctGTGTGTCGCTCCGCCATCTCCTTGTGCGGTCATGTGATTCACTACGCAACATACGTGTACACTTTACGATCCTCGGGCGTCCGGGCCAAATATTCTCTTTCTATAAGTCCTTCTATGCGCTTTTTAATGACCACGGGGCTGGGCAGAAACCGTGCCCTCAGCTGCTGGGTCACCTGATGGGACACGGACGCAAACAGAGCGTTAGAAATCtgcatgtaataaataaaaatcacacaaagaaCACGTGCTCACCTCCGCTACCAGTACGTTGTGCTGCATCTTCTTCCTGGACTTCATGATGCGTACAATGGCAGCCTcgatttcatgttttctgtcatCGTCTACCTTCTGCCTCGTCTCCTTACGCTCTGGGTCCGACTCGCCTTGCTTAGCAGCACTGTTTGTATTTTGACTCTGTGCAGTTTGGAGGTAAACTGGTCGTTGACTGTAAACACGTGGCCGCTTTCGATCTCTTTGCTCTTGGGCTCTTTCGTGAGAACTCTCTGGGTGGGCTTCCCGCAGGCTAGAGACTGCAGGGCCCGGACCAGCTCACGCTCAGGGATGTCCGTCTCCTGCTGGATCTCCTAAAGGGGTGAAGGTTTGACCCGGGTCTGATTAAACAGATCATAGGTGAGCGGGGCGTCTAGATCGGGATGAGCTGGAGAGGACGCTTTACCTCAAAAGTAAACTTCTCTCTGTTGTTAAAGAGCATGAGGATGGTCATCTGGAAGGTGGACACCTGCAGAATGTGCTTGCGTGTGTTTGAGCCTGTTAGCAAAGCCCCGCCCACACCAACATCAGAGCCATCCTCCTGAAGAGAGAAAGTCATTTTAAcattctttattaaaacatcCAACATGTGAGAAAGAGTTCGATGACAAGTTGTTTTGTCCTCGCTGAAAGAAAagctgtttcaaaaaaaaaacccacaagcAATTagaaaatgttgatatttaataatttagacCAATAACATTGCACTGTGCACAACATATGGTTGTTTCTTGCATCCTGCTGTCTGATTCATTCATTAGgccatatatttaaaatatttaagtacatGAAATGAGTAGAGTTTTTAAAtaagtagaattttttttatacattaacaattatgtttatatttataggtATGTATGCGTATGTGTATAATGTGCATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21844 lncRNA upstream 369448 23180731 ~ 23181157 (+) True G14779
TU21843 lncRNA upstream 370850 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 371474 23158098 ~ 23179131 (+) True G14772
TU21593 lncRNA upstream 500633 23046633 ~ 23049972 (+) True G14611
TU21589 lncRNA upstream 520726 23029167 ~ 23029879 (+) True G14607
TU21987 lncRNA downstream 5016 23558249 ~ 23562352 (+) True G14837
XR_006252160.1 lncRNA downstream 89230 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 89779 23643012 ~ 23643550 (+) False LOC122355031
TU22015 lncRNA downstream 115330 23668563 ~ 23683398 (+) True G14850
TU22023 lncRNA downstream 116557 23669790 ~ 23683398 (+) False G14850
XM_043253712.1 mRNA upstream 17248 23530770 ~ 23533357 (+) True scg2b
XM_043222059.1 mRNA upstream 107904 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043222658.1 mRNA upstream 290131 23250192 ~ 23260474 (+) True LOC122327352
XM_043220303.1 mRNA upstream 525210 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 534125 23005897 ~ 23016480 (+) False mbd3a
XM_043252984.1 mRNA downstream 10531 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 19865 23573098 ~ 23624866 (+) False mbnl1
XM_043252985.1 mRNA downstream 22875 23576108 ~ 23624866 (+) False mbnl1
XM_043252983.1 mRNA downstream 30978 23584211 ~ 23624866 (+) True mbnl1
XM_043252981.1 mRNA downstream 30978 23584211 ~ 23624866 (+) False mbnl1
TU21973 other upstream 2631 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 855275 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1621786 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1689163 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1834318 21715355 ~ 21716287 (+) False ccl20a.3
unassigned_transcript_256 other downstream 183818 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 382688 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 530605 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 940205 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1488196 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile