RNA id: XR_006252160.1


Basic Information

Item Value
RNA id XR_006252160.1
length 742
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122355031
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23642463 ~ 23643550 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTAAATGAAGTGAATCTCTGAAGTGATGCAGATGAGCAGAGATCGGGAAAAGGCTGAAGTGATACGAGCTGAGGCACTCTTAAAGCATCTGCAGCAGATTTTACACACAATCACATCTTTTTCCTGGAGcaaaatgtcaaaaaccaGTATTTTAGTGGCTCAGGATCAGTTCAGCTGTCCGATCTGTCTGGATCTACTGAAGGATCCAGTGACCATCTCCTGTGGACACAGCTACTGCATGAACTGTATCACAGACTGCTGGAATCAAGAAGATCAGAAGGGAGTCTACAGCTGCCCTGAGTGCAGACAGACCTTCACTTCAAGACCTGCTTTAAACAAGAATGTGATGTTGGCTGAAATGGTGGAGAAATTCAGGACGACGAACATTCAAGCGGTTTTTCGTGCTTCCAGTTATGCTGCACCATTCAGAAAAGCCAGTCTGAGGTGATACAGATGATCAGAGATTGAGAAAAAGCTGAAGTGAGTCGAGCTGAAGGACTCTTAAAGCAACTGAAGCAGGAGATCGATGATCTGAAGAAGAGAGACGCTGAGCTGAAGCAGTTTTTACACACAGACGATCGCATCTATTTCCTACAGagTTTTCAGTCTTTAACACTGCACATAAATATCTCCGTCTGTCTGATGGCAACAGATTGACTACATTTACTGGAGCAGACCAGCGGTATCCTGATCATCCGGACAGATTTCATGGTTTTtctcaggtgttgtgtagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21987 lncRNA upstream 80111 23558249 ~ 23562352 (+) True G14837
TU21979 lncRNA upstream 89230 23550605 ~ 23553233 (+) True G14832
TU21844 lncRNA upstream 461306 23180731 ~ 23181157 (+) True G14779
TU21843 lncRNA upstream 462708 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 463332 23158098 ~ 23179131 (+) True G14772
TU22015 lncRNA downstream 25038 23668563 ~ 23683398 (+) True G14850
TU22023 lncRNA downstream 26265 23669790 ~ 23683398 (+) False G14850
TU21994 lncRNA downstream 46897 23690422 ~ 23691860 (+) True G14841
TU22034 lncRNA downstream 76117 23719642 ~ 23740497 (+) False G14859
TU22036 lncRNA downstream 76117 23719642 ~ 23762825 (+) True G14859
XM_043253002.1 mRNA upstream 5033 23634222 ~ 23637430 (+) True LOC122354999
XM_043252978.1 mRNA upstream 12090 23625007 ~ 23630373 (+) True LOC122354760
XM_043252984.1 mRNA upstream 17597 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA upstream 17597 23573098 ~ 23624866 (+) False mbnl1
XM_043252985.1 mRNA upstream 17597 23576108 ~ 23624866 (+) False mbnl1
XM_043224637.1 mRNA downstream 54732 23698257 ~ 23702264 (+) True klf6b
XM_043221844.1 mRNA downstream 59976 23703501 ~ 23715237 (+) True pitrm1
XM_043255742.1 mRNA downstream 122433 23765958 ~ 23770492 (+) False LOC122356725
XM_043255751.1 mRNA downstream 122846 23766371 ~ 23770492 (+) True LOC122356725
XM_043224831.1 mRNA downstream 129355 23772880 ~ 23775183 (+) True lpar5a
TU21973 other upstream 94489 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 947133 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1713644 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1781021 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1926176 21715355 ~ 21716287 (+) False ccl20a.3
unassigned_transcript_256 other downstream 93526 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 292396 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 440313 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 849913 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1397904 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile