RNA id: TU22023


Basic Information

Item Value
RNA id TU22023
length 2167
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G14850
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23668563 ~ 23683398 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATACTGATTAAAACTAACATTCTCTGAAATTTTTTGGTGTAGTATCAGTGAATAGACTGATGGATTGCCCTTTTTTATTCGTGAAGATTGATTCAAGAACAAACCACTCCCATCCTTATTTGATTCTTTAACCTTAAAACTGACTGAAAACACAGTTTCAGGACTTGGGAGACTCATTCCATCATTAGTGCAGTTTGcaaaaactctgactgtgtaATATGTGTCTTGTTTCATTCCCTGAAGAGTGCACTCCCTGTTTGTAGATTTCACAGACTTCCaaggtttttcattttcctgATCCTTTGGGCATTCTCTGTACTCCAGCATGTATCCAGTGATCAGAACATCCTCACCCACAGATGTAGGGACGTTCCAGACTACAGTCGCAGTCTCAGATTCTACTTGTTTTACTGTAGGTGCTCCTGGAGGAGCACAAGGACGAGTCCTGAAGAATGATGTTGTGTCACTTGTCAGACTCACTCCTGGACGACACACAGCCTTGCAGGTAAAACAGTACTCTTTATTGGGTTTTAACTGCTTGATAGTGACCTGGTAAGAAACCCCATCAGTATACACCTCTGTCCATTCAGAGCTCTGTGCGGACTGATATGAAATACAGTACGAGTCCACACAACTAACACCATGTTCAGGAGGTTTTATTTGAAGATGTATGCAGTCATGCTCAGCACTCAAGAAAACCGGTATTGGTGGTTTTGAGGAAGCTCATATTGTGAGCTAATAAGTCTCCCTCTTTCATAAACATGAATTGAAGAGGCAGTACTGAGTTCATCTGGTATTGATGCAATGCAGAATTCAATGTTCGTTCTACCTTTATTGGCTTCTTTGAAATCTAGGAAGGCCTGTATGGTTTCCCTGGTCAATGTAGTTGCATCTCCTGATGAAAACCATTTCTCTGTCTTCTTTGAGGATTTTTGATCATAACTTATTTCCTCTGCATTGTTACAAGATTGTGTCTTCAGGTAATTCTCCATGTCTGAAAGGTACGGTTCAGTTTCATTTAAGGACGTGAGTGCAAAAGCAATCACATAGTTATTGGATGCCTTCAAGACAACTTTGTCCATTTCGTTGCTGGATGAAAGAACAGGCACGTCTTTCATGATGTCAAGGTACGATCTAACAACATTcatctctcgctctcgctcACTTAGATACGTGGTTAGCAGAGCACCATTAAATGGGGATCTTTCTTTGTCATTCAGGGCATCAATGAGCTCCTGTTCTTCTTTACCTCCACCCCTTATGGATGGAAGAACCCTGCAGAGGTGTTtctgaaaaactattttataatcCGAACAGAGggctttacattttttgatcTTAGCTGTGATTTCAGGGAATTGAATGGCAACACTGTCCCTCATCAGATCTTGACATTGAATGTCACAGTTATGCAGTTCATCTATGATTCGTTGGAGTCGTCGTATTAGGCTAACACTGATCTCTCTGACTAGCTGAGCAGCTGCTGAATCTAGTTTTTTCAGAGGGTAAAGCCACACGGTCATGGGCACAGCATTTTCTCCATGTTCTCCCAACAGTTTTGGTAGCTCTGAGTACACTTTAATGGCATCAACATAGGAGACCGGATTGTTTTCCAGAGCAAAATCTCCATGAAAAGTGCAACTGAACTTGTCAATTTGatctttttccatttcattcattttcaaagatGCTTGGCCCTCTATTGATATTAAAGGTATCTTTTTGATTGATGCTTGGAGGTTACCTTGTATGTTTTGGTGGTTTTCATTAGACGAAACCTCAcgatcaaaaataaagaaagcctGAGCTCCATAAAGTAGAGCCGTAACAACATGAGTGGCCGAGCCCTCCTGAAATATATTGCAGTGCTTTACATTCCCTGCTCCAAGATGCTCCATAGTCAACTGCTCGAAGCGTGAGGTTGTATGATAGTGTAAGGTAACTCGAGACTGATGTTTCGATGATTTCTTGTCATTTAAATAGTCTGCTGATCCTTTCACACTGACCAATCCACACAGAAAGCTGGCTTCAAGAGATGCAGAGACATTAAGAGCACTGGCTTTGTCTTCACTTGAATCCGTGGCAATAATTTTGAAGTCAGTGTTTGGCTGTGGTCGTACATTAATATTCTTCTGCAGCATCTCAGCATCCCAAAGGGTTATTcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22004 lncRNA upstream 26240 23643012 ~ 23643550 (+) False LOC122355031
XR_006252160.1 lncRNA upstream 26265 23642463 ~ 23643525 (+) True LOC122355031
TU21987 lncRNA upstream 107438 23558249 ~ 23562352 (+) True G14837
TU21979 lncRNA upstream 116557 23550605 ~ 23553233 (+) True G14832
TU21844 lncRNA upstream 488633 23180731 ~ 23181157 (+) True G14779
TU21994 lncRNA downstream 7024 23690422 ~ 23691860 (+) True G14841
TU22034 lncRNA downstream 36244 23719642 ~ 23740497 (+) False G14859
TU22036 lncRNA downstream 36244 23719642 ~ 23762825 (+) True G14859
TU22037 lncRNA downstream 38868 23722266 ~ 23722747 (+) True G14860
TU22056 lncRNA downstream 61473 23744871 ~ 23746553 (+) True G14872
XM_043253002.1 mRNA upstream 32360 23634222 ~ 23637430 (+) True LOC122354999
XM_043252978.1 mRNA upstream 39417 23625007 ~ 23630373 (+) True LOC122354760
XM_043252999.1 mRNA upstream 44924 23584222 ~ 23624866 (+) False mbnl1
XM_043224637.1 mRNA downstream 14859 23698257 ~ 23702264 (+) True klf6b
XM_043221844.1 mRNA downstream 20103 23703501 ~ 23715237 (+) True pitrm1
XM_043255742.1 mRNA downstream 82560 23765958 ~ 23770492 (+) False LOC122356725
XM_043255751.1 mRNA downstream 82973 23766371 ~ 23770492 (+) True LOC122356725
XM_043224831.1 mRNA downstream 89482 23772880 ~ 23775183 (+) True lpar5a
TU21973 other upstream 121816 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 974460 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1740971 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1808348 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1953503 21715355 ~ 21716287 (+) False ccl20a.3
unassigned_transcript_256 other downstream 53653 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 252523 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 400440 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 810040 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1358031 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile