RNA id: TU22043


Basic Information

Item Value
RNA id TU22043
length 1399
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G14863
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23791262 ~ 23795903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACGGTATAGAGTGGATTACAGCTGACATGACTAGCACTCTACAGAGGGTAGGAATGAGGGTTGGTTACTGTTAAGCGGCTTTACTAGTAGGGGAGGGGGCGTCTATTTCTCTTCTCTCCGCCCACTCACCGAGATGGTAACTGGTATGACATCATAACATCTTCGTCCACGTTAGCCATGAGCAGCCACAGTGGGTCCTGCAGTACATACTTGATCAGGCTCTCGTGGGTTTTAGCTTGGCCAGCCCTGATTCCTGTTTTCTCCACACTACTGCTGCAGTTGGCCTGTGGTACACCAGAAGGCGCTGTGCTCTCCTGTCTCTCAGCACAACGCTGAGTCTCTTCTAACTGCAACAGGTTGAGCTGCAAAGGCGAGCTGCAGCGCGACTGGAACAAAGGAGGAGACGGCGGCCCGCCTCCGCCCAACGACTGAGGGGTGGGGCTTCGTGAAGGCTCCTCCCTCAGCCCGGGCTCTGGCGGTTTGGGGGGCTCCTCGGGGCACGCGAACGGAAACGGCTGCGGCGGGAATGGAGTCTGTGGGGTAAAGGGGTTCTGGGGGGCGAACTGGGTCTGTATGGTGAACGTGGACTGTGGAGGGAATGGGGACTGTGCGGTAAAACTAGTCTGAGGCTGAAAGGTGGGCTGTGCTGGGAAACTTCCTTGCTTGGGGTAAAAGGGCTGCCTTGGAGCGCCGCCCATCTGCGGGAACATGTAGTTGGGCAGCACCAGCGCCACCATGGGTGTGACCAGAGGAGCCGAATACGGGGTCTGGATGGGCTGCATGGGAATGTGCGGGTCCTGGCTGCACTGGCTCTCGCCGAAGCCTGATAGCGGAGCATCTACCCTGGGCTGCATGCTGCCGGCTCCCGGGTACATCTGCAGAGGGTATGCGGGCATCACAGCTGGATAGGCGATGGGGAAGGTGGACTGGGATGTGTCCGAGGGAGACCAGGAGGTCTGGTTGAGGCCCTGCAGCTGAGGTCTGGGTGGAGGTCTGCGGCCTGAAGGAGTGCTGTCAGAAGATTCGTTTGGCTTGATGCGCTTGGACTTGGTCTTCTTGTTACGACCCCGGCGAGTCCCTGTGGTTTCCTGTGCGCCGCCACCACCCTGCTTACAAGAGCGAGCGGTGGGAACAGCTGCAGAAAAACACAGGAAGCTGTTAGCGACTTGTATTGTATAGAGGGAGCAGTCGGCTTTGAAAGCGTGCACACCTCGCAGCTCTCTGAAGCGGTTGAGGAACGCCTGCTCTTCCTTCTGGGTGTGCGCCGCCAGAACCTGCTTGGTCAGGCCCAGTTTCTTGTAAGCCTCTCGCTCCTGATTGTGCGGCGAGATCGCGGCCGGAGGAACAGCGAGACCCTGAGCTTCTGTGCCTTCAGCGCTGGGGACATCCTCGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22074 lncRNA upstream 11142 23777103 ~ 23780120 (+) True G14889
TU22036 lncRNA upstream 28437 23719642 ~ 23762825 (+) True G14859
TU22056 lncRNA upstream 44709 23744871 ~ 23746553 (+) True G14872
TU22034 lncRNA upstream 50765 23719642 ~ 23740497 (+) False G14859
TU22037 lncRNA upstream 68515 23722266 ~ 23722747 (+) True G14860
TU22081 lncRNA downstream 7881 23803784 ~ 23804629 (+) True G14896
TU22211 lncRNA downstream 83275 23879178 ~ 23879604 (+) True G14978
TU22212 lncRNA downstream 87859 23883762 ~ 23884416 (+) True G14979
TU22226 lncRNA downstream 131137 23927040 ~ 23927250 (+) True G14988
TU22227 lncRNA downstream 131391 23927294 ~ 23927613 (+) True G14989
XM_043224868.1 mRNA upstream 5007 23783724 ~ 23786255 (+) True hes6
XM_043224831.1 mRNA upstream 16079 23772880 ~ 23775183 (+) True lpar5a
XM_043255742.1 mRNA upstream 20770 23765958 ~ 23770492 (+) False LOC122356725
XM_043255751.1 mRNA upstream 20770 23766371 ~ 23770492 (+) True LOC122356725
XM_043221844.1 mRNA upstream 76025 23703501 ~ 23715237 (+) True pitrm1
XM_043217674.1 mRNA downstream 124328 23920231 ~ 23925631 (+) True LOC122323665
XM_043217662.1 mRNA downstream 133728 23929631 ~ 23931889 (+) True LOC122323657
XM_043217689.1 mRNA downstream 140018 23935921 ~ 23938953 (+) False LOC122323670
XM_043224190.1 mRNA downstream 199280 23995183 ~ 23997150 (+) True LOC122328481
XM_043218841.1 mRNA downstream 233101 24029004 ~ 24032203 (+) True LOC122324443
unassigned_transcript_256 other upstream 54140 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 243288 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1095932 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1862443 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1929820 21860891 ~ 21861442 (+) True G14471
XR_006247041.1 other downstream 140018 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 287935 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 697535 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1245526 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 1246080 25041983 ~ 25042065 (+) True trnal-uaa_1

Expression Profile