RNA id: TU22243


Basic Information

Item Value
RNA id TU22243
length 1674
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G14996
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24009525 ~ 24023608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCATGTTCATTGTACATTATTCTTACCCTTTCTGGACTATCATATGTATGGCAGTCACTGTTGAGTTGCTGCATTGTCTGAaatgtttacaacaaaaaatatttaaataataatgtaatattaagaaGTAATAGAAAGTGGGTCCTCACGTACAAGCTTTGCATACCGAATTATTAAACATCTGCTGAATATATCAATTTGAAATCCTATGTTGTATTGCtatgttcttttgttttgaacaactgctttataattattttcactgTGAGCCTAAACACATTGCAAATCGATCATCTTTGCTGGTGTCAAAAAGAAAGGCTTTCAGCTGCAGAGGGATTCATTCAGAGTTCTGAAGTGTGTCTCAATGCTTTCTGCTATGCAAAGTCAAATTATGCCTCTTTTAGGTGATAGGTGGTGATAATTTTGCTATATAATtgacaaaaattaaaagcaaataaaataatttttattgtgttcttccacatttaataattattgtcTCTATACTGATTATCTCTGATCAGATCATTAAAACGTTCTTTGTAACCAATTAGTAACCAActaggtaaaaaaaatctatattaatcTTAAACACACTTCTATATTATCCAGTTTCATATTCCATATTTACCTAAACACAATACAACCTGTTTAGGATTAAATGTCATGATGTTTTGTAACTGTGATGAGGACAGGACATACTTTGCTGCAAAAAATCCAAGCAATCCTTCAAAAATATTGAGAAGTAGTAAAGTAGTAGTAAAAGCAAACTAAATATGATTACTActaatgtaattattatctGGCAGATGTTCCACAAACAAAATAGCAACCTCAGTTTAGAGCAGTTTGATTAACagccagaaaagaaaaaatttattactttgttatatcaagtttttttgttatatctttgttttttaaaggcCTCAAGCtgtgcatatttcatttttaaactgcaaCTTTTAAATCTGCTGAATGTATTTTCTTaactactttttattatttcgaAATTCCACATTGTACtactaaataaatagtttaatgaCAACATATTAATGATGTCTGCCAGCTTAacgataaataataatttgaagcTTACCTCAACTTGAGCATACAGTGTACTATCTCCCCCTACCTGCTCCTGGTCACCTTTTTTTACACTTGATGTACAGAAAGGCtaaaaaacatatcaaaacgAACACCGCCACCGAACCAACTACCGGCCACAGGAAAGGTGACCCAATCTGCACTTGACTTGAGTCATTCTCTAGAAAATAAGACACATGTCATTAAGAAGTGCAGGTTTCAGATCAGTTGAACAGTTCCTCTAGATTGACTGGATACCGTTATTAATGCAGAGTTCTTTGATGCTCATTCTGACTTCTTTCCAGCTGACAGGGTTGCTATGGTTACATGTGATTGATTCCTCACTGCAGTTCAGGATGAGAGTGTTGATctgtgatgtcacttcctctgGAGAGCATCTGTTGTTCTGATAGGTGGAGTTAATCATGAACTCTTGAGCGCTGCATGTGAAGTTCACAGAACAGGAGTCACTGCTGGAAGCGTTTGAGTTAACAATCAGGACGGGAGCCTCCACAGCATCTGAAACGCATTTTCAATGTaacacaaatatacaatataatcaACTATAAAAGAAGcaactttg

Function

GO:

id name namespace
GO:1990138 neuron projection extension biological_process
GO:0048588 developmental cell growth biological_process
GO:0048675 axon extension biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247802.1 lncRNA upstream 14404 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 15014 23993475 ~ 23994511 (+) True LOC122328496
XR_006247798.1 lncRNA upstream 23322 23985758 ~ 23986203 (+) True LOC122328475
TU22230 lncRNA upstream 70509 23938789 ~ 23939016 (+) False LOC122323670
TU22227 lncRNA upstream 81912 23927294 ~ 23927613 (+) True G14989
TU22263 lncRNA downstream 24192 24047800 ~ 24048342 (+) False LOC122327416
TU22264 lncRNA downstream 38276 24061884 ~ 24062193 (+) False LOC122327425
TU22285 lncRNA downstream 117632 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 122526 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 151677 24175285 ~ 24211058 (+) True G15039
XM_043224190.1 mRNA upstream 12375 23995183 ~ 23997150 (+) True LOC122328481
XM_043217689.1 mRNA upstream 70572 23935921 ~ 23938953 (+) False LOC122323670
XM_043217662.1 mRNA upstream 77636 23929631 ~ 23931889 (+) True LOC122323657
XM_043217674.1 mRNA upstream 83894 23920231 ~ 23925631 (+) True LOC122323665
XM_043224868.1 mRNA upstream 223270 23783724 ~ 23786255 (+) True hes6
XM_043218841.1 mRNA downstream 5396 24029004 ~ 24032203 (+) True LOC122324443
XM_043222775.1 mRNA downstream 22077 24045685 ~ 24048465 (+) True LOC122327416
XM_043222786.1 mRNA downstream 35804 24059412 ~ 24062202 (+) True LOC122327425
XM_043222800.1 mRNA downstream 47601 24071209 ~ 24073204 (+) True LOC122327432
XM_043219721.1 mRNA downstream 55548 24079156 ~ 24081504 (+) True LOC122324938
XR_006247041.1 other upstream 70582 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 272403 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 461551 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1314195 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 2080706 21928747 ~ 21928819 (+) True trnam-cau_1
TU22269 other downstream 60230 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 469830 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1017821 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 1018375 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 1018929 25042537 ~ 25042619 (+) True trnal-uaa_2

Expression Profile