RNA id: XM_043222775.1


Basic Information

Item Value
RNA id XM_043222775.1
length 1684
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC122327416
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24045685 ~ 24048465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAGAGGATCCACAGTATGGATGGGAGTCTGTTTGTGCTGCTTGTGCTGTCAGGGCTTCTGAAGACCACTTCTGGTCTCTCTCGTCAGTACTACTATATAAATGCAAGAATGTCATGGCCAGAGGCTCAGAGTTACTGTAGAGCAAAGCACACTGATCTGGCTACTGTAGACAGCATGGATGATGCAAGCGGGCTGATAAATTTCGTGGATGCTGGATACAGTGGATCAGTGTGGATTGGACTGAAGAGGGGGACACAGAAACGCTGGGTTTGGTCTAATGGAGAAGATACACTTGCAGAGTACAAGGCCTGGGGTGCAGGAGAACCGAACATTCGAAACAATTGTAGCTTTCTTGCCTATGGAGTTTGGAATACTTTACAATGCTCATCTGTGATTTACTTTGCGTGCTACAATGAAAGCACTGGATACATTTCGGTAAAGATGTGGAAGAACTGGACAGATGCTCAGAGCTACTGCAGACAGCATTACACAGATCTGCCTACCATCCACAACGCTGTGGAACACAATCAGCTGAAGAGTGTTGTTTTGTCTACATCATGGGTCTGGATTGGTCTATTCCTGGACTACTGGGAATGGTCTGACAAATGGAGCAACTTCTTCAGATACTGGGCAGCAGGTCAACCACTTCAGAGATCAGGATCTGGTGACTGTGTTGGCATGACAACAGCCGATTCTGGGAAATGGATTCATGAAAGCTGTGATCTACACCATCCTTTTATCTGCCATGGATGGCCCAAGTCTCCTTACCGCACATACCAGTATATGAATGAAAGCATGATCTGGCAAGATGCACAGAGTTATTGCAGAGCGAGATTCACTGATCTGGCCACTGCTGACACCATGAATGATGTGAGAAGGCTAGTAAACATAGTGGATCCTGGATACAATGGATCAGTATGGATAGGTCTCCACACCGGGACTCAGTCTCGCTGGGTCTGGTCTATGGGGGAAGGCACAATCTCTAACTACACTATCTGGAACCCAGGAGAACCTAGTGGTGATGGGAAGTGTGTGAGGACTTTTAATGGAAGCTGGTATGATGAAAGCTGCAGCACTCATCTCCCATTTGTGTGTTTCAATGACAGCACTGGTTTTATTACAACTGAATCTGCCATGACATGGAGAGATGCTCAGAGTTACTGCAGACAACAACATACTGATTTAGCGAGCATCAGCAGCCCAGAGCAGCAGAATCTGCTCAGTAATGAATCGTCGCTCTGGATTGGTCTGTTTCTGGACTCTTGGGAATGGTCTGATCAGTCCAATCTCAGTTTTAGACACTGGGACGCAGATCAACCATCACAGACTTCAGGATCTGGTGACTGTGTTGGCATGACAACAAACAATTCTGGGAAATGGACTCAAAAGAGCTGTGATCTACAGCAGCCTTTTATCTGCTATGGAGCTGACACCTTAATAAGAAAACAGATTGTACGTTTAAAGTTGTCCTGTAATGGGAAATGTACATTAAATGATCCCTCTCTACAGACTGCCTTTCTAAACATGATAAGTGAAAAACTGAAGAGCATGGGGCTAGAAAGTGACAACATTAAATGGATACAGAGAGAAGACGAAGAGGTGTTTCATCTAGAGagcaaatatacagaaaaatcaAATAATCAGTGTAACAGGAAGTAATCATCAATGTACTTCTTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22243 lncRNA upstream 22077 24009525 ~ 24023608 (+) True G14996
XR_006247802.1 lncRNA upstream 50564 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 51174 23993475 ~ 23994511 (+) True LOC122328496
XR_006247798.1 lncRNA upstream 59482 23985758 ~ 23986203 (+) True LOC122328475
TU22230 lncRNA upstream 106669 23938789 ~ 23939016 (+) False LOC122323670
TU22264 lncRNA downstream 13419 24061884 ~ 24062193 (+) False LOC122327425
TU22285 lncRNA downstream 92775 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 97669 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 126820 24175285 ~ 24211058 (+) True G15039
TU22308 lncRNA downstream 138159 24186624 ~ 24250684 (+) True G15041
XM_043218841.1 mRNA upstream 13482 24029004 ~ 24032203 (+) True LOC122324443
XM_043224190.1 mRNA upstream 48535 23995183 ~ 23997150 (+) True LOC122328481
XM_043217689.1 mRNA upstream 106732 23935921 ~ 23938953 (+) False LOC122323670
XM_043217662.1 mRNA upstream 113796 23929631 ~ 23931889 (+) True LOC122323657
XM_043217674.1 mRNA upstream 120054 23920231 ~ 23925631 (+) True LOC122323665
XM_043222786.1 mRNA downstream 10947 24059412 ~ 24062202 (+) True LOC122327425
XM_043222800.1 mRNA downstream 22744 24071209 ~ 24073204 (+) True LOC122327432
XM_043219721.1 mRNA downstream 30691 24079156 ~ 24081504 (+) True LOC122324938
XM_043222812.1 mRNA downstream 39506 24087971 ~ 24096897 (+) True LOC122327442
XM_043220920.1 mRNA downstream 61198 24109663 ~ 24111683 (+) True LOC122326195
XR_006247041.1 other upstream 106742 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 308563 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 497711 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1350355 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 2116866 21928747 ~ 21928819 (+) True trnam-cau_1
TU22269 other downstream 35373 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 444973 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 992964 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 993518 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 994072 25042537 ~ 25042619 (+) True trnal-uaa_2

Expression Profile