RNA id: XM_043222786.1


Basic Information

Item Value
RNA id XM_043222786.1
length 1644
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC122327425
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24059412 ~ 24062202 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATGGGAGTCTGTTTGTGCTGCTTGTGCTGTCAGGGCTTCTGAAGACCACTTCTGGTCTCTCTCGTCAGTACTACTATATAAATGCGAGAATGTCATGGCCAGAGGCTCAGAGTTACTGTAGAGCAAAACACACTGATCTGGCTACTGTAGACAGCATGGATGATGCAAGCGGGCTGATAAATTTCGTGGATGCTGGATACAGTGGATCAGTGTGGATTGGACTGAAGAGGGGGACACAGAAACGCTGGGTTTGGTCTAATGGAGAAGATACACTTGCAGAGTACAAGGCCTGGGGTGCAGGAGAACCGGACATTCGAAACAATTGTAGCTTTCTTGCCTATGGAGTTTGGAATACTTTACAATGCTCAACTTTGATTTACTTTGTGTGCTACAATGGTAACACTGGATACATTTGGGTAAAGAAGCAGAAGAACTGGACAGATGCTCAGAGCTACTGCAGACAGCAATACACAGATCTGCCTACCATCCACAACGCTGTGGAACACAATCAGCTCAagagtattattttatatacatcaTGGGTCTGGATTGGTCTGTTCCAGGACTATTGGGAATGGTCTGACAAATGGAGCAACTTCTTCAGATACTGGGCAGCAGGTCAACCACGTCAgacatcaggatctggtgactGTGTTGGCATGACAACAGCCGATTCTGGGAAATGGATTCATGAAAGCTGTGATCTACACCATCCTTTTATCTGCCATGGATGGCCCAAGTCTCCTTACCGCACATACCAGTATATGAATGAAAGCATGATCTGGCAAGATGCACAGAGTTATTGCAGAGCGAGATTCACTGATCTGGCCACTGCTGACACCATGAATGATGTGAGAAGGCTAGTAAACATAGTGGATCCTGGATACAATGGATCAGTATGGATAGGTCTCCACACCGGGACTCAGTCTCGCTGGGTCTGGTCTATGGGGGAAGGCACAATCTCTAACTACACTATCTGGAACCCAGGAGAACCTAGTGGTGATGGGAAGTGTGTGAGGACTTTTAATGGAAGCTGGTATGATGAAAGCTGCAGCACTCTTCTCCCATTTGTGTGTTTCAATGACAGCACTGGTTTTATTACAACTGAATCTGCTATGACATGGAGAGATGCTCAGAGTTACTGCAGACAACAACATACTGATTTAGCGAGCATCAGCAGCCCAGAGCAGCAGAATCTGCTCAGTAATGAATTGTCGCTCTGGATTGGTCTGTTTCTGGACTCTTGGGAATGGTCTGATCAATCCAATCTCAGTTTTAGACACTGGGACGCAGATCAACCATCACAGACTTCAGGATCTGGTGACTGTGTTGGCATGACAACAAACAATTCTGGGAAATGGACTCAAAAGAGCTGTGATCTACAGCAGCCTTTTATCTGCTATGGAGctgacaaattaataagaaaacagaTTGTACGTTTAAAGTTGTCCTGTAATGGGAAATGTACATTAAATGATCCCTCTCTACAGACTGCCTTTCTAAACATGATAAGTGAAAAACTGAAGAGCATGGGGCTAGAAAGTGACAACATTAAATGGATCCAGAGGGAAGACGAAGAGGTGTTTCATCTAGAGAGCAAACATACAGAAAAATCAAATAATCAGTGTAACAGGAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22263 lncRNA upstream 11070 24047800 ~ 24048342 (+) False LOC122327416
TU22243 lncRNA upstream 35804 24009525 ~ 24023608 (+) True G14996
XR_006247802.1 lncRNA upstream 64291 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 64901 23993475 ~ 23994511 (+) True LOC122328496
XR_006247798.1 lncRNA upstream 73209 23985758 ~ 23986203 (+) True LOC122328475
TU22285 lncRNA downstream 79038 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 83932 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 113083 24175285 ~ 24211058 (+) True G15039
TU22308 lncRNA downstream 124422 24186624 ~ 24250684 (+) True G15041
TU22317 lncRNA downstream 158784 24220986 ~ 24231256 (+) False LOC122325249
XM_043222775.1 mRNA upstream 10947 24045685 ~ 24048465 (+) True LOC122327416
XM_043218841.1 mRNA upstream 27209 24029004 ~ 24032203 (+) True LOC122324443
XM_043224190.1 mRNA upstream 62262 23995183 ~ 23997150 (+) True LOC122328481
XM_043217689.1 mRNA upstream 120459 23935921 ~ 23938953 (+) False LOC122323670
XM_043217662.1 mRNA upstream 127523 23929631 ~ 23931889 (+) True LOC122323657
XM_043222800.1 mRNA downstream 9007 24071209 ~ 24073204 (+) True LOC122327432
XM_043219721.1 mRNA downstream 16954 24079156 ~ 24081504 (+) True LOC122324938
XM_043222812.1 mRNA downstream 25769 24087971 ~ 24096897 (+) True LOC122327442
XM_043220920.1 mRNA downstream 47461 24109663 ~ 24111683 (+) True LOC122326195
XM_043222826.1 mRNA downstream 50575 24112777 ~ 24115107 (+) True LOC122327448
XR_006247041.1 other upstream 120469 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 322290 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 511438 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1364082 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 2130593 21928747 ~ 21928819 (+) True trnam-cau_1
TU22269 other downstream 21636 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 431236 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 979227 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 979781 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 980335 25042537 ~ 25042619 (+) True trnal-uaa_2

Expression Profile