RNA id: XM_043222812.1


Basic Information

Item Value
RNA id XM_043222812.1
length 1811
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC122327442
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24083838 ~ 24096897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caCATATTTGCAGTTTAAGCTTTTATGTCATTCAACAAACTAATACAGTAAATGTATGATGTTTTTGATCATTACAGCAGTGAGGATCTGTGTGAGCAGTCATGGACGGGGGTCTGTTTGTGCTGCTTCTGCTGTCAGGGCTCTTCTGGAGCAGTTCTGCTCTTTCTCGTCCGTActtctatataaatacaccaATGTCGTGGCCAGATGCTCAGAGATACTGCAGAGAGAGATTCACTGATCTGGCTACTGTAGACAACATGGATGACGTGAACAGGCTGGTAAATATAATAGATGCTGGATACAGTGGATCAGTGTGGATTGGACTGATGAAGGGGACACAGAAACAGTGGAGTTGGTCTAATGGAGAAAACACAACTTCTCAGTACTATAACTGGGCTTCAGGACAGCCAGATGCAGATGGAGATTGTGTTGTTATTAATTCTGGATTTTGGCATGATATGTCATGTAGTAATAACCGATATTTTGTGTGCTACAAAAGTGATGGATACGTCTTTGTAAAAAGTGATAGAAACTGGACAGATGCTCGGAGCCACTGCAGACAGTATTATACCGATCTGGCCACCATCCACAGCTCTGTGGAGAATAAGCAGATAACTACGCAAATTTTAACCGGAACGTCCTTCTGGCTTGGTCTGTTTCTGGACTCTTGGGGATGGTCTGATCAGTGGGATCTGAGTTTCAGACACTGGGCAGCAGGTCAACCTTCCCAGACTTCAGGATCTAACTGTGTTGGCATGACAAGAACCGAGTCTGGCAGATGGTCTCAGTACAGCTGTGATGTACAGCAGCCATTTATCTGCTATGGAGGTGATTCTGCTCTTTCTCGTCCGTACttctatataaatacagcaaTGTCGTGGCCAGATGCTCAGAGTTACTGCAGAGAGAGATTCACTGATCTGGCTACTGTAGACAACATGGATGACGTGAACAGGCTGGTAAATATAACAGATGCTGGATACAGCGGATCAGTGTGGATTGGATTGAAGAAGCGGACACAGACACGCTGGAGTTGGTCTaatggagaaaacaaaaactactatAAATGGGGTTCATTACAGCCGAATGGAGATGGAGTTTGTGCTGCTATATATTATGAGCTTTGGCATGATGCATCATGTGACTTGAATCTATACTTTGTGTGCTACGAAAAGTCTGGATACATCTTGGTACAGAGCTCCAAAACATGGAGTGACGCTCAGAGCTACTGCAGACAGTATCACACAGACCTGGCCACCATCCACAGCTCTGAGGAAAATGATCAGATAAATCAAATTCTTTTACTTAGCAATTACATCTGGATTGGTCTGTTTCTGGACTCTTGGGGATGGTCTGATCAGTGGGATCTGAGTTTCAGACACTGGGCAGCAGGTCAACCTTCCCAGGCTTCAGGATCTAACTGTGTTGGCATGACAAGAACCAACTCTGGCAGATGGTCTCAGTACAGCTGTGGTCTACAGCAGCCGTTTATCTGCTATGGAGatGACATAAGAAAACAAATTGTGAGATTGAAAGTCACATGTAAGGGAAAATGTGCATTGAATGATCCTTCACTACAGGCAGCTATTCTGAATAAGATAAGTGAAAAGCTGAAGAACATGATGTTGGAGAGTGAAAGCAACATAAGATGGAGAAAGGGAGGGGATGGAGAGGTGTTTCATCAGGAGAACAACCATATAGTGAATTTAGATAGATTCTTGGGTCTGATGAATAGAGCTGCTTCTTCAGAGACTGAGCAGCAGGTCAACCATCTCAGAGTTCAGGATCCGGTGACTCCGTTGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22264 lncRNA upstream 25778 24061884 ~ 24062193 (+) False LOC122327425
TU22263 lncRNA upstream 39629 24047800 ~ 24048342 (+) False LOC122327416
TU22243 lncRNA upstream 64363 24009525 ~ 24023608 (+) True G14996
XR_006247802.1 lncRNA upstream 92850 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 93460 23993475 ~ 23994511 (+) True LOC122328496
TU22285 lncRNA downstream 44343 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 49237 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 78388 24175285 ~ 24211058 (+) True G15039
TU22308 lncRNA downstream 89727 24186624 ~ 24250684 (+) True G15041
TU22317 lncRNA downstream 124089 24220986 ~ 24231256 (+) False LOC122325249
XM_043219721.1 mRNA upstream 6467 24079156 ~ 24081504 (+) True LOC122324938
XM_043222800.1 mRNA upstream 14767 24071209 ~ 24073204 (+) True LOC122327432
XM_043222786.1 mRNA upstream 25769 24059412 ~ 24062202 (+) True LOC122327425
XM_043222775.1 mRNA upstream 39506 24045685 ~ 24048465 (+) True LOC122327416
XM_043218841.1 mRNA upstream 55768 24029004 ~ 24032203 (+) True LOC122324443
XM_043220920.1 mRNA downstream 12766 24109663 ~ 24111683 (+) True LOC122326195
XM_043222826.1 mRNA downstream 15880 24112777 ~ 24115107 (+) True LOC122327448
XM_043222839.1 mRNA downstream 19845 24116742 ~ 24117634 (+) True LOC122327453
XM_043257880.1 mRNA downstream 144975 24241872 ~ 24249991 (+) True abhd17aa
XM_043220538.1 mRNA downstream 452398 24549295 ~ 24551538 (+) True LOC122325496
XR_006247041.1 other upstream 149028 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 350849 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 539997 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1392641 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 2159152 21928747 ~ 21928819 (+) True trnam-cau_1
TU22338 other downstream 396541 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 944532 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 945086 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 945640 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 946293 25043190 ~ 25043271 (+) True trnal-uaa_3

Expression Profile