RNA id: TU22305


Basic Information

Item Value
RNA id TU22305
length 3188
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G15039
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24175285 ~ 24211058 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaaaaaaaaaaaaaaaaaaaaattaaaaataagtagcactttccagcactgataataataataataataataataataataataataacatgtttattgagaagcaaatcagcatataaaaatgtgacaCCGAtcgtaatgatgctgaaaattcagctttgcatcactatattttttaaatatattaaaatagaaaacagttgttttaaattgccaTACTATTTCGtgttattatagattttttgatcaaataattgttgccttgatgagcataagagacctctttaaaacaacacaaatctgAACTTAATCATTTAATCATAGATGTTGGCAAACATTTCTACACTAGCACTAGAAActaaaataaggaaaataaatattttcgtGTGGACCTTGAAATCATTCCTACTCTTCTGAACATTTACTCCTCTGAAGTGAGCATactaaaatttttataataatgcatttaaagtatTCAGTGATGTTAAAGGTCCAGAATGACTGTTactctgcacaaacacacatcagtGTATCGCTCATGACAGTGCTGTTGAAGgtttttagcataattttatCTAGGATCAGTGTAGTTTCTTCAACATATgatgaataatattaaagtgGGATTAATCGTCCGTGCAAACTGAGACCGTAATTTTCACGTGTTTATTTTGAACACattcatccattctttctttgCTACAGAAAACGCAGAAAATCGAACCTGATCCAAACAGTCTTTTATGACAGACGAGAGTTAATTCTCAGACAACTGTCCCAAAAGAAACTGTAACAAGAAATACTTCTGAATTACATCAACAATTCATTAAAGAGaccatcagaaaaaaaaatataaaactcagCCTTGGACATAAAACTCTATGTTCTCTATATTTCAAAatccatttattattaaaagtctTTCGAAAAATGACCGCAACTGTTCCCTTTAactcaaacatttctttgagtgtaaaaaaatataataaaaccctGTTTCGGTTGCTGTTTCGTTCATATCCCTTTTTAGTTTTGATTGTATGTATTTGTTGTATGCATATAGAAAATATggagaatttattttttgtcaagcTTGTATACAGCTCGTTTTCGAATAAAGCACACGGCAAATAAAAAACCAAACATCTTGAATAACTTAACCAGAAAGATCACCCACAAACCAGTCCAGACCAGCATGGGAAAAGACCTTTGCCAGCTGGTTTAAGACACGCACCCCTGGTTGCACGACATTAGAAATATGTCAAAAAGAGCCTGTTGAAGTGTTGGAAGtattcactgattattattaataacttctCTCATTTAGTCCGCAGCAGCAACGGAGCAATTAGTTATTTGTTGCTACGAACGCATTCGAACTCGATAAATAAGAGACGAGAAGGACAGCAGCGTGTTTGCATTGGGTCGAATACGGCTGATCAATCACAGGGTGATGTTAATTTCTACATTGATTTCATTAGGAAGTCGAAAAGTTGCAGTGGCCTAATGGCATTCGATATCTCTCGCGTTTGAATCCATTTAAGCCATTTATCATCTAGATCCACTCACACAATGACATGACTCTCCCGGGCTGTTCGGCAGTCGAGAGCGCGTGCTAAATTTACCACCGGCTGACTCTTAAGAAGCTAACGCTAAACTCCGCTGTGATGTTGCAAATTGGAATGTAACGTCGCCATAGTAACACGTTCACTTTATTTTCAGGTGCACGTGAAACCAGCCAACGTGACTGTGAACGACTTGCACCGGCTTGTTCTAAAAGatcgtttttaaaaatagtaccGCTCTGGCTGAACACTTAAGAAAGAAAGGCAGTGAAACGTTAAAGACGGTTAGGTTGGAACCGATGCGAATCAGACACGTTAGCTTGGTTAGCTTCGCCTATGTTTTGGTCGCGTTTAAAGCGCCCCTGTTAGGGGTTTtggaaaatgagctttcatgcagcGTGTGGTGAAGTTTTCAATCTGAAAGCGACCGTATAAAGTCTCtcgaaagaaagagtcgactccgaatcactgaaacgagtccCGAGCCGTTTCATGGTGATGTCAGAatgaaacatttgaatattGCCCTCTCTCTTTTTGGTCTTTTCGCgtcggtctgaatgaaaatgctaattcgttCGTTGCCACTAGGTAGGTGCCGCTTTGAAGCGTTAAAaggctgctttaaatgaaatcgaccaatcactggaggggtttggagaaatgaatcgtttgggagtcactGGACAAATGAGGTAAAAAATAGATTCAcattatttaattgtgtttgaccttgcatgcatgtgaaCCTGTtctttgggactcccaaaactaaaatgtgaatctttcataacccataacaggggcactttaaagggaaagttcacccaaaaatgtatttacgcACACCTGCATGGGTTTCTTTCTTCTATTCAACACAAAACATGATATTTCGAAGAACGATATATTCATGAATATGAATTCTGTTCAACAGAAGGCTTGGAAGAagatgaaggtgagtaaattatgacagaattttctttttttggtaaactatccctttaaggcaaCACCGCACGAGTCCTTCGCAGGTTTTATTTCGGTAGTTAGGATGATGTCTAAGTCGACGGCAGACAATGAGGCATCTTACTAGGCTTTGAAATAGAGCTACTGTGTGAATTCAAAGGCAGTGTTGTCATGAAACATCAAAAGTTAAGATTGATTCTGACTGAAAATACAGGAAGGAGACACTAGGATTTCCCCCTTGGGGAAAGTATTCTATGCTAGGCATTAGCgactatacatttaaaaatctaactCGAAGAAGAAGGCTTGGATCGCTGAAAAATCCAGACTAAAGTTAAATTTACATCAACTGTGGGCTCCTTCGAATATTTCCGTACCTTTTTACATTCTTGCATCCTTTTAAGCCTCagactctgattggtcagtggTCACACTGCCGTTCTGCTCTCCCACAACCGATTGGTCCTGGGTATTTGTGACTCCACCCACAGTAAATGTTGGCCCGTCTCCCTCCCTGACCGATTCTGAATCAGTGGACTTCCCCGTTTGCTCAGTCAGATTAGGCCCCTCCCATTTCTCTTCATCAAGCCTACTGGAAATCGACCAATAGAGATGAGCGTCCAAACGGGCAGCAGCCAATGCAAGTTCTCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22291 lncRNA upstream 27896 24146134 ~ 24147389 (+) True G15029
TU22285 lncRNA upstream 33364 24141240 ~ 24141921 (+) True G15026
TU22264 lncRNA upstream 113092 24061884 ~ 24062193 (+) False LOC122327425
TU22263 lncRNA upstream 126943 24047800 ~ 24048342 (+) False LOC122327416
TU22243 lncRNA upstream 151677 24009525 ~ 24023608 (+) True G14996
TU22317 lncRNA downstream 9928 24220986 ~ 24231256 (+) False LOC122325249
XR_006247274.1 lncRNA downstream 10282 24221340 ~ 24226390 (+) False LOC122325249
XR_006247272.1 lncRNA downstream 10529 24221587 ~ 24226390 (+) True LOC122325249
TU22325 lncRNA downstream 30839 24241897 ~ 24243238 (+) False abhd17aa
TU22326 lncRNA downstream 40087 24251145 ~ 24251814 (+) True G15058
XM_043222839.1 mRNA upstream 57651 24116742 ~ 24117634 (+) True LOC122327453
XM_043222826.1 mRNA upstream 60178 24112777 ~ 24115107 (+) True LOC122327448
XM_043220920.1 mRNA upstream 63602 24109663 ~ 24111683 (+) True LOC122326195
XM_043222812.1 mRNA upstream 78388 24087971 ~ 24096897 (+) True LOC122327442
XM_043219721.1 mRNA upstream 93781 24079156 ~ 24081504 (+) True LOC122324938
XM_043257880.1 mRNA downstream 30814 24241872 ~ 24249991 (+) True abhd17aa
XM_043220538.1 mRNA downstream 338237 24549295 ~ 24551538 (+) True LOC122325496
XM_043222873.1 mRNA downstream 408929 24619987 ~ 24626282 (+) True LOC122327477
XM_043264542.1 mRNA downstream 525959 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA downstream 525959 24737017 ~ 24754495 (+) False zcchc2
TU22269 other upstream 86844 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 236342 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 438163 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 627311 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1479955 22691251 ~ 22695330 (+) True fcer1gl
TU22338 other downstream 282380 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 830371 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 830925 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 831479 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 832132 25043190 ~ 25043271 (+) True trnal-uaa_3

Expression Profile