RNA id: XR_006247274.1


Basic Information

Item Value
RNA id XR_006247274.1
length 2735
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122325249
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24220986 ~ 24231256 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCTCCTGATTAAAATGGAGGCGATCCGACTGTCGGGGTGGAAGGGAGATCGGAGGGAGAAGCGAAGCGGCGTCGGCGTGATTCACCGGCTCTGCGCAGGTTGATCAAGCAATGACGtatcacctaaaaatgaaaatgtgtttcttaaTGGAAACAGATTGGGAGAAACCGAGCATTTCctgtggatcctctgcagtgaatgggtgccgtcagaatcagtcagaacagctgataaaaacatcacaataattcataaCACGTACCACTCTAGTCCGTCAAGTATAAAATGCTGTCGATTTGTAATAAACACATCcagcaatgcttttttttaactgtagcATCTAgccaaaatatttcagtaaatcgataatccataataatgcttcctccagtgaaattGTGAATCTCCATGTTGTCTTCCCACATCAAAACACATATCAGCAGAATTAAATGACAGTGTAGAAAGCCATATTATGTATAGCAGACTTGTATTTTACCAacagtttaaagtaaaataaaaatctattacaatGTTATTACATTATCATTATGGCATTATAACAAAATTGCAGCTTTTTGAGTCGATGgaatcatttctgaaaatcTGTTCTAGTAAACAAACAGATCCACGTCTCGGATTGCTTCagtgaatttacattttagtgtacACTGTTTCCTTTAATCTGGGTGTGGCTTGCATACTGAAAAACAACACACCGCGCGCAGCATACATAGTGCACACTAAAAATAGTAGCGTGCATTAGTAACGGCGGTGTGACATTTTGAACATACCCTCAGGAGTTTTAAATCTGTCGAGCTTTTAGATTCCTTCTTTGAGCGTAGTATTATCTGATTTGCAAAGTCACGCGTGTCTTTGTGCTTGGAGTGTTTGACTGCTTGAGTTTCTAATTGGTAGTTCTGAAACATCTTGATTAAATGAgttgtgtgtttcttcattctGGTAGTGGATCATTTACGATGATTGAGTTTTGTCTGGGTTTGATTAAGCCGTATCACTGAAAGCTAATGAGTTGCTTTCATGTTCTGCTCCTGTTTGGCCATCTGGATGAGTCTGAGATGAAACAGTCACAGGCTAGGATGGGAATGGACATTTGTAACGAGGAGAAGAACATCTTACAAAGCCTCGACGAAGGACTGGAGGGACCGGTTCACTCTGGCCATCATCATCAATGAAAACACTCATCTGTCTGGAAAAGCAcaattttcaaacatttcacaattcacttttttatttatgtgtttgcaTTGATACCTAGCAAACGAAAGCTGTATCACTGGCTTCTGAAGACCTCTGCCGAAACACTTTATGTAtacctaaaatattaatacattaataaatactcatTTTCACAGTTTAATCTTATGTTTAAAGGAATGATTCTGTTGAAATACAAACTAAATAACAGCTGCTTATAGGCAAGCTTACAGTGATTGCTCCATGAATAGATTTCGATCaacacattttttctaaaaattcaGCAGCATGCAGGAATATCCAATTTTGTCTTTCTTGAAAATGCTGGTTATTGTCATTGACTGatgatttttgttatttttggtgATAAATGACAGCCTATAAAAATTGCTAATGCTATATTATTACCAAAAACTGAATTCAATTTGTTTAGGAATTCAAATAGGACAGTATTTCATTTATGATCTGATTGATTGTGTGCCTTATTAAtccgttttttttaattgcaggtTTTGCAGGGTTTTTTCAGAGATCCAAAACATCAATATAAACTGTACAaacttaacaaaataaaaaaaaaatgacaaaaagattgAACCCAAGATTTGGTCACAATGagacatgataaaaaaaactgcaagcaatgtttaaaatgctGGCCCTTTTTGACCCGGTAACGTAAAATTAGcAGGTGCTGGACATTGGCGACAGGCTTATCATTCTCAATGAGTACACAGAGGAGAAGAGGACCTCAGGGATTTGGTGGAGGCAGCTGGTTGCCAGAGCAACGGCAGGACTGATATTCAGGACAGGAACCTTTTGGGGCGAATGAaagtttcttctttctttctgatgCCACTGTTGAAGAGAAACAAATGTAACGATGATAAATGTTTCACCGTGACAGGCACGATCCAGAACAAATAGCTGAACGTAAATGGCTCACATAAAAGGATTTCTAGTCAAGAATAACCATAGACAATTGGATAGTATAAGCAGTGcgtgtggggaaaaaaatgcatttgctggcTTGGAAACGTCACTCTCGAAGACCTACCATTAAAGTTGAACTACATTCGTTACCTCACCATGGCAACGGGGcagaaaaataatgtttctgaataaaaatccTCGCTAGAAAAAAGATTGCATCATCATCACGAATCTTAACTGCTCGATTGCTTGCAttgtcaaaaatgtaaactatattaTCACAAATAATGCTCTATAAACTCGCAAACAAATCATCAATGActgtcaaaaccagggaaaggGCTTTTTATGAATGCTGCATCCATATCCTGGGCATTATTCCACATGCATCCATCGATCTCCCCGTTTTATGAGgtacatgcacaaaaacacttCATCAAGAAGCCAAGCTCCCAGTGTTTTATAGCATCATGCCTATAAATAAAGATCTGTAATGGAATTGGCTTACCATTTTATATTTGGATTGTTTCATTTGTAATCGACTCCATTGGACTGTACTTCCACATCCCTGCCGGTTGCCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22305 lncRNA upstream 10282 24175285 ~ 24211058 (+) True G15039
TU22291 lncRNA upstream 73951 24146134 ~ 24147389 (+) True G15029
TU22285 lncRNA upstream 79419 24141240 ~ 24141921 (+) True G15026
TU22264 lncRNA upstream 159147 24061884 ~ 24062193 (+) False LOC122327425
TU22263 lncRNA upstream 172998 24047800 ~ 24048342 (+) False LOC122327416
TU22325 lncRNA downstream 15507 24241897 ~ 24243238 (+) False abhd17aa
TU22326 lncRNA downstream 24755 24251145 ~ 24251814 (+) True G15058
TU22332 lncRNA downstream 28815 24255205 ~ 24422012 (+) True G15059
XR_006247535.1 lncRNA downstream 201596 24427986 ~ 24435655 (+) True LOC122326923
TU22341 lncRNA downstream 273849 24500239 ~ 24501316 (+) True G15067
XM_043222839.1 mRNA upstream 103706 24116742 ~ 24117634 (+) True LOC122327453
XM_043222826.1 mRNA upstream 106233 24112777 ~ 24115107 (+) True LOC122327448
XM_043220920.1 mRNA upstream 109657 24109663 ~ 24111683 (+) True LOC122326195
XM_043222812.1 mRNA upstream 124443 24087971 ~ 24096897 (+) True LOC122327442
XM_043219721.1 mRNA upstream 139836 24079156 ~ 24081504 (+) True LOC122324938
XM_043257880.1 mRNA downstream 15482 24241872 ~ 24249991 (+) True abhd17aa
XM_043220538.1 mRNA downstream 322905 24549295 ~ 24551538 (+) True LOC122325496
XM_043222873.1 mRNA downstream 393597 24619987 ~ 24626282 (+) True LOC122327477
XM_043264542.1 mRNA downstream 510627 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA downstream 510627 24737017 ~ 24754495 (+) False zcchc2
TU22269 other upstream 132899 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 282397 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 484218 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 673366 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1526010 22691251 ~ 22695330 (+) True fcer1gl
TU22338 other downstream 267048 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 815039 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 815593 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 816147 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 816800 25043190 ~ 25043271 (+) True trnal-uaa_3

Expression Profile