RNA id: XM_043264542.1


Basic Information

Item Value
RNA id XM_043264542.1
length 4807
RNA type mRNA
GC content 0.48
exon number 15
gene id zcchc2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24687556 ~ 24754591 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTGGCAAACTGACCACAGCCACACCGTCAGACTACAGACAGCAAATTTATACGAAATTCCGCCCCGAATCGGGAATTTCATCGCATTTTGATGCCGAAATATTGGCCGGAAAGTACCATCCATGGACTTCCATCTCTGATGTTCGCGTTTGAGAGCTGataatgatgaagatgaagctgCGAGCGGCGGGAGGCGAAAATCACCGATGCGACTTGAATTCCGTTAACGGATCCGATCGGGAGAGCGGCACCGGAGCGGCTCAGCTCGACAAGGAGGCGGTGTTCGAGTGGTTCGGCTTACAGCTGAACCCGTCCGGACGCGTGGAGCTGCTTTGCGGGCTGCTGCATATGTGTCAGCCGCTGGAGCTACGCTTCCTCGGCGCCTGTCTGGAGGATCTGGCCCGGAGAGATTTCACCGTCCTGCGGGATTATGAGATCCGGGCCAACTGCCCCGCTGATCTGGAGGGGCTGGTGGACGTAAGCGACCCCGTCGTGCTGTCCAAACTGCTCGTTTATTTGTCTCTGCTCGGATCCAAGAGCAGGGAATGCGCCGGGATTCTCTTCAGGACGTTGAGTCGAATGGACGCCGGGATGTGCGGCGCTCTACCGGAGCCGGAGACTGTGGATCAACTGCGACTGCTCTTCACGATGGGATCGTTACACCCGGCGTTCAGTTTCTATCAGCGGGAAGAGCTGCGAGCGCAGTTGGACAGGCTCCAAAGATGGagcCAGTTTTCCAGGCCGGGGTTCCTCTGTCCACACCGGGAGAATGACGTAGACTGGACACTTTGCAGCAACGCCAATCCACACCTCAGCGGCACGTCGCAGAGGGAAGTTGTGCACATTGAGAAGATCATTCTGAAGGAGGTTTCTATGGGAGGAGACGGCAGGCAGTACAGTTTTGAGGTGAAATGGTCAGACTCTTCCTCTACTGCCGTCACCAAAAGTCATCGTGAGTTGGAGGATTTTCTATTAAAGcTTCCTAAGGATCAGAGCCCTGATGGCTTTGAGAAGGGCATCGTCAGGTTACTCAGTCGTGGAGATCAATGTGAATCCAGAGAACTGGAGAGAAACCTCAGGGAGAAGTTCCTGTCTTTATCACAGGATGTCCTTCAGAGATGTGACGTTTCCAGGTTCTTCATGTCTGACGCGTCTGTACTGCCGTGCAGCCACTGTACCAGTGCGCCCGTAGCCAGAATCCATCAGCCTGAGCGCGGTTTCTCTGAGGACTGCTCAGAGACTTCCAGCCTGGAGGAGGatgTGGAGGCTTACAACGTCAGAGCTGCGGGACTGAGTAATCGGCGCTCTGAATGTCAGAGGAGAGGAAACTGTGAGCAGAATGGAGAAAGGGTttggaagaaagaaaatgaattggAACAGCAGAGCTGCACAAATGATAGAAGACTCTTCACAGCTGGACAAAAGAACAAAGGAAGAACAGTTGTAAAAAGgGATAGAGGCAAACGAGTTACCGGTGTCAAGACTTCTAATGGAATCCAGAAACCTTCTGCCGCACTGATGATCAACCAGGCAGCTTGCAAAGACACGGGAAGGGACCGGTATGGGGACACATCTTCAGAGAGCTCAAACTCAGTGCCGTCTAGTCCTGTTCACCAGAAGAGCCTGGAGGACCAAGATACGGAGAGTCAGTCTGATAACTCAGCCCAGGAACCAGCTGAAAAGACTCACCTCGCCAAAGGCGTTGGCGGGAAAGCAGTTGCCATGGTGAATCCATTAGTTCCAGAGCCGCAGAATGTTCCGCAGCCTTCTTCAGTGGTGGAGCTGGCGCTGACCGCGTGCCTCCCTTTCCCTCTGCAGTACAACAGCACCACCCAGAGAGACGCGGGGCAGGGTAAGATAACCATCACCATCCCGCTGACCCAAGACCCTGGAGCATCCTCGGCCAGCGCTCACCCACAGCAGCAGCCGCCGCTGGGAGCGTTCAGCGTCCTCTCGCCCAGCCAGTGTCCTCTGCAGCCCGCCAACACCACCACAACCAACAATCCTGTCAAAACAAATGCCAAGGCCTCTGTTACTGCCAATGTCGCTTCCAGTTCCTGCAGTAACCAAGTACCAGGACCTTGTCCCACAACTGTACCCACGCACACCCCGGGACCGGGGCCCCTGCCGGCCCCCGCGGTCACACACAGCACCGCTCAGAGCGATTCCTTGTCCTACATCAACAGCTCCAGCCTGCCAGTTACGCCACAGGCCAGTGGtacgcagcagcagcagcagccaggGGGCTGTAATGCCTGTGGCTGCCGTGGCACCTGCGGAGGAAACAGTGCCCACCAGACACCCAGCTACTTCCTGCCGCCCCAACCCCAACCAGCCCGTCAGATGTTCGGGCCGCCGCCTGCGTTCTTCCACCTCCCTCCCTCTCTATGCAACAGCTTCCCTGCCCAGGGTCACCAGAATAACGGCACGCCGCTGCCCTTCTACACTCACACCGGTCCTCCAGCGGCGTTCCTGCACGCTCACTCCGAGCACATGCTGGCTTCGCAGGCGGGATACAATCTGCCTCAGATGCCCCCCTTCCGTCGCTTTTATCCACCTGTCTTTCAGCCGGTTGGCATGATGTCTAGCGGAAACAGCATGAAGAAGACCAACAACGTGTCCTGCTATAACTGCGGCATGAGCGGACATTACGCTCAAGACTGCAAGCAACCGTCCATCGACGCCGGCCTGACAGTCAAACAAGATTGAGGGATGAGAGGAAAGTGGTGATAACGGTGGCTTCCGACTGAAGTACGTTGCCCCAAACTCCTCAGAAGCACTAGATAAAACCGATTGACAGCGAGCAGGGGACCAAAGCCCAGCGAGCCAGCGATTCCACAGACCTTGAGATACAgttctgttctgtttgtgtAAGCATCCTTGTCCGgagagcaaaaaaacaaaacacacaaaaaaagagccAATGCAAGGCAGGTTGCTTAAACTTAATGGGTTCtcttagaaattaaattatctTAATGTTATAGTTAAATAGGACGGATTGCGAGAGGATTTTTGTTTTAGGTTCAGACTAGTTTGTTGTCAGAAGGATTTTATACAAGCTGATGTTCTCATTCGCAGCGTCTGGCGAAGTTGATGAGAAAATTAAACTTGAGTCCTTtagtgcatttttgtttttccgaCACGGGTGGATCTTTATAGGATTTTATACGTTACGTGAGAAAACGACAATAAAAgtcccgaaaaaaaaaaaaggaatattttggaagtttgttttgttattgaAGATGCGCTTGTTCTCTTGCTGATAGCAGTTTATAATGATGCTCTAGCGACGTTATACGCTGCCGGTTTGAACTGTTCTCATTCTCAACGCGATGCACTACAACTGTTGTTCTCCGTAAAATGTGAGTCAGGTGTTTGACATGCACTGAAATCTTCAGATCTGCAGTACTGCCTCTCATTTACACGCTCCGACCGCTAGAGAGCATCTCGGGGCCCCCACGGACTCCAGCGGCCTCTCGCGGGAGACTCTGTGCTTGAAGTGTTTTGAGTCAGACAAAATCCTTCCTACTTGTTCATCCTAAAGCACTGTTAGAGGAAATGCAGTTTAGTTTCGACACAAGATACTCTGTAACCGAGAGTTTTGTTAACATATGACAACTTTGAGCATCATAATATCTTGCTTGcgtgttaagtttttttttgcaaactgtCAAAGAACCAGAGGGCGAACATTTGTGCCTATTGCCATGCAAGCAGCTGGAAGTGTattgaaaatcatttcaaaagTCTTAATTCTTTGTGTTAAAGGAGCACTTCATTTTTTGGGAAATAGGCttattctccaactcccccagagttaataagttgcgtttttaccgtttttgaatccattcagccgatctccgggtctagCGCTAGCACTCTTAGCATaacttagcatagatcattaaatccGATTAGTTTCGATAGCTTTCCTATTTAATACTCGACTCTTCTTTAAATATTTCGTGGAGTacgccggaatgagagtatagtttcTAATCGGCCTAGAAAGCGCAACGAGTCacgttttaaataggaaaaatatcgaaatTCTTCGGacatttttgaacgcgatgctaatcagattcaattgtctatgctaagctatgccaaaagtgctatcgccagactcGGAGATCGACTGAATAGATTACAAAACAGTAAAGTTCAATTTATTAACTCTAAGAAAGTTGGAGaattaacctttttttcttttctttttttaagtggagcgttcctttaaagtacatatttaaaatttaaagttgTATTACTGAAATCTTATTGCAATTTTTGCCAAAGCAGccctcttgttttctttttttttttttaaataaatatatataaggaGATTTGGCATGTTtgtattgataaaataaattttattttggtattttcaAGAGATTTTGATGAAGGGCTCAAGGCCTTTCATGCTTGTCCAGGtgtttttagcacatttatGGTTAGTAACATGCGGTGGACTAGACGAGTTGTTTTCCACAACAGTGTGttgcaggtttttttaaatgtgctttcgTTCGGTTCAGTAAACTGTTACTAATCTGTAAATAGTCTCTAAAGGGAGTTAACTACTCAAGGTTGAAACCTGTTGACTGTATTCGTCacttttttatagatttatgaAGCTGTACTGTATGAACGAGGTTTACGTTTACTGTATTTCATATGTAAATGTTGATTAATCTGTACTGAGAGGTCAAATTAATCTGATCACATTTGCTTTTTTGGCAAATTGGTCATTTCTGTCAAGATATtagcaataaatataaaaaccca

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22700 ZCCHC2; Zinc finger CCHC domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22350 lncRNA upstream 134225 24523424 ~ 24602792 (+) True G15071
TU22343 lncRNA upstream 223956 24507886 ~ 24513061 (+) True G15069
TU22339 lncRNA upstream 230619 24502752 ~ 24506398 (+) True G15066
TU22341 lncRNA upstream 235701 24500239 ~ 24501316 (+) True G15067
XR_006247535.1 lncRNA upstream 301362 24427986 ~ 24435655 (+) True LOC122326923
TU22492 lncRNA downstream 34390 24788885 ~ 24840993 (+) True G15165
TU22497 lncRNA downstream 42318 24796813 ~ 24797564 (+) True G15169
TU22524 lncRNA downstream 58804 24813299 ~ 24816430 (+) True G15189
TU22581 lncRNA downstream 351208 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 351208 25105703 ~ 25169740 (+) False G15225
XM_043222873.1 mRNA upstream 110735 24619987 ~ 24626282 (+) True LOC122327477
XM_043220538.1 mRNA upstream 185479 24549295 ~ 24551538 (+) True LOC122325496
XM_043257880.1 mRNA upstream 487026 24241872 ~ 24249991 (+) True abhd17aa
XM_043222839.1 mRNA upstream 619383 24116742 ~ 24117634 (+) True LOC122327453
XM_043222826.1 mRNA upstream 621910 24112777 ~ 24115107 (+) True LOC122327448
XM_043264823.1 mRNA downstream 88283 24842778 ~ 24849115 (+) True viml
XM_043264671.1 mRNA downstream 96268 24850763 ~ 24919804 (+) True pde1cb
XM_043264680.1 mRNA downstream 105469 24859964 ~ 24919804 (+) False pde1cb
XM_043264690.1 mRNA downstream 122375 24876870 ~ 24919804 (+) False pde1cb
XM_043265044.1 mRNA downstream 177087 24931582 ~ 24934535 (+) True neurod6b
TU22338 other upstream 237332 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 648576 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 798074 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 999895 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 1189043 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_258 other downstream 286934 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 287488 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 288042 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 288695 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 289248 25043743 ~ 25043825 (+) True trnal-uaa_4

Expression Profile