RNA id: TU22492


Basic Information

Item Value
RNA id TU22492
length 543
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G15165
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24788885 ~ 24840993 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacatttaaaaaagtgaacCACACTATACAAATGGTTTTCCGGTAGCAGGTAACAATGCAGACAACACATCTGTCTACAAACCTGTCCAACTCGTTCATTCTTGGGACGTGCAGCTAAAATTGCACCTTTTTCCTAAATGATTTTCCTTTCTTCTCTTAAAACATCTCAGAAGCCCCTCGTTGCTAAGATTCCAATGCAtctttgttcgtttttttttttctcttcatttaaaTGCTGATAGGCAATAACATGCTTAATGTGTAGGGTTTATTTCCGATTGGGTTTTTAAAAcctgcaatgttttattttgcgaGATTAAAGCTCGAGGTCTCCGTATGTACATTTCCAATGCGGTCCGTCCATATGCAGGGCGGCAGTAAAGTCCGTCTCTCGCACAAACACATTCACCGACGCGCACACACTCTCCTCTATTAGTCCTTCTGCTTTTTAAACTCAACACAGGCCGAACATCAAGAGGAATGATATTTATTACCCGAgagacaacttaaaaaaaagaaaaaaaagaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22484 lncRNA upstream 34294 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 186093 24523424 ~ 24602792 (+) True G15071
TU22343 lncRNA upstream 275824 24507886 ~ 24513061 (+) True G15069
TU22339 lncRNA upstream 282487 24502752 ~ 24506398 (+) True G15066
TU22341 lncRNA upstream 287569 24500239 ~ 24501316 (+) True G15067
TU22581 lncRNA downstream 264710 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 264710 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 270268 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 282307 25123300 ~ 25145006 (+) True G15240
TU22593 lncRNA downstream 308262 25149255 ~ 25157235 (+) True G15233
XM_043264542.1 mRNA upstream 34390 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA upstream 34390 24737017 ~ 24754495 (+) False zcchc2
XM_043264532.1 mRNA upstream 34390 24737017 ~ 24754495 (+) False zcchc2
XM_043222873.1 mRNA upstream 162603 24619987 ~ 24626282 (+) True LOC122327477
XM_043220538.1 mRNA upstream 237347 24549295 ~ 24551538 (+) True LOC122325496
XM_043264823.1 mRNA downstream 1785 24842778 ~ 24849115 (+) True viml
XM_043264671.1 mRNA downstream 9770 24850763 ~ 24919804 (+) True pde1cb
XM_043264680.1 mRNA downstream 18971 24859964 ~ 24919804 (+) False pde1cb
XM_043264690.1 mRNA downstream 35877 24876870 ~ 24919804 (+) False pde1cb
XM_043265044.1 mRNA downstream 90589 24931582 ~ 24934535 (+) True neurod6b
TU22338 other upstream 289200 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 700444 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 849942 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 1051763 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 1240911 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_258 other downstream 200436 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 200990 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 201544 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 202197 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 202750 25043743 ~ 25043825 (+) True trnal-uaa_4

Expression Profile