RNA id: TU22497


Basic Information

Item Value
RNA id TU22497
length 635
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G15169
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24796813 ~ 24797564 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTCCATGTAGCGTGACTTGGCCATGCTCTGGCGGGTGTACACCTGCTGGATCCCCGCCCGCAGATCATCCCAGATCTGGTCCAGCCCGATCTGCTTCAGACCGTGAGGGGTCTGGGTGCGGTTAGACGACATCCTCTCGGCCCTGCCGCTGCGCGTCTGACGCTCCTCCTGACGTTTGATTGGTTCTCGTGCCTGTCACTCAAGAGCTACTCCTCCATAGGGTCAAGCGGTGAGAGAGGACGAGGAGGGGGAGACCCTCAGGGAACAGCGACGGACAGGAAAGAAACCTACTGTTCGTTATATCCTGGGGTTTCCTTCTTGTATCCATGGCAACAACTcaagaaacagaaaatattcCGCTAGGAGCTCTGAGCCGCAGCCGGTGCTGTAACCAAGCATACTAACAGCGATCTGCCATTAAATCATGACTTACAGTGATCTACTCAGTCGGAACAGCGCACCTGTGGGACAGCAGAACATCTGGACCCAGATCtgattatttgttaataactacaaaacaacacaagaacAGCTGAACATGGCAATTATATTAAGCAttcagtttaaatgtaattacgattaaatgtaatgttggagaaaatcatttaataacagaaaatataaatatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22484 lncRNA upstream 42222 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 194021 24523424 ~ 24602792 (+) True G15071
TU22343 lncRNA upstream 283752 24507886 ~ 24513061 (+) True G15069
TU22339 lncRNA upstream 290415 24502752 ~ 24506398 (+) True G15066
TU22341 lncRNA upstream 295497 24500239 ~ 24501316 (+) True G15067
TU22524 lncRNA downstream 15735 24813299 ~ 24816430 (+) True G15189
TU22581 lncRNA downstream 308139 25105703 ~ 25210816 (+) True G15225
TU22584 lncRNA downstream 308139 25105703 ~ 25169740 (+) False G15225
TU22600 lncRNA downstream 313697 25111261 ~ 25115138 (+) True G15236
TU22605 lncRNA downstream 325736 25123300 ~ 25145006 (+) True G15240
XM_043264542.1 mRNA upstream 42318 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA upstream 42318 24737017 ~ 24754495 (+) False zcchc2
XM_043264532.1 mRNA upstream 42318 24737017 ~ 24754495 (+) False zcchc2
XM_043222873.1 mRNA upstream 170531 24619987 ~ 24626282 (+) True LOC122327477
XM_043220538.1 mRNA upstream 245275 24549295 ~ 24551538 (+) True LOC122325496
XM_043264823.1 mRNA downstream 45214 24842778 ~ 24849115 (+) True viml
XM_043264671.1 mRNA downstream 53199 24850763 ~ 24919804 (+) True pde1cb
XM_043264680.1 mRNA downstream 62400 24859964 ~ 24919804 (+) False pde1cb
XM_043264690.1 mRNA downstream 79306 24876870 ~ 24919804 (+) False pde1cb
XM_043265044.1 mRNA downstream 134018 24931582 ~ 24934535 (+) True neurod6b
TU22338 other upstream 297128 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 708372 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 857870 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 1059691 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 1248839 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_258 other downstream 243865 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 244419 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 244973 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 245626 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 246179 25043743 ~ 25043825 (+) True trnal-uaa_4

Expression Profile