RNA id: TU22577


Basic Information

Item Value
RNA id TU22577
length 1611
RNA type TUCP
GC content 0.51
exon number 8
gene id G15224
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25170736 ~ 25175288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggCCTTTTAAAAGTGACGGTCTGTCTGTTTATGTGACAGATCCGGTAGCGAATACAGCCGTCCGAAGAAGCGTTATGTCAGTCTGTTCTTGTGGAGTTTTCCCGTACCGTACTGATACTAATGTCTCCTACAAACGCCGATGCAATGCAAGACGAGACTGACACCGAGCAGACCTCTGGGAACTGGTCTTGGTGGCCCCTCTGGAGACCAACATCCATGTCACTATTGAAAAGTGCGAAGCTAAAATTCTCGCCTGTCTCCAGAATGACGTTTGGTCCAGGTTTGTGACGTTGCCAAATCAAAACCGAATATGGACCCTTAAAGTCACCGATAAATCAGCCCGCAAGCATAAAGCTGAAGCCGCTCAGACGCCCCTAGTGATGATCCACGGCTTTGGAGGCGGCGTCGGCCTCTGGATCCGAAACCTGGACGCTTTGAGTCAGTCTCGACCCGTCTACGCCTTCGACCTGCTGGGCCGGTGCGCAGCTCGCCCTCGTTCCCGTCTGGCGCCCTCGTTGGCTGAGGAGCAGTTTGTGTCTTCCATAGAGCACTGGAGACAGTCACTGGGGCTGGAGCGCATGATCCTATTGGGCCACAGCCTGGGTGGTTACCTGGCAACATCTTACACGATCCAACATCCGGAAAGAGTCAGTCACCTCATCCTGGTGGATGCGTGGGGTTTCCCTGAACGACTTCAGCCTCAGTTACAGGGGTCAGGAGGTCAAGGGTCAGAGGTTAAAAGGGTCTCACCTCCTCGCTGGGTGAAAGCTGTGGTGTCAGTGTTCAGCTTCTTCAACCCGCTGGCCGTCATCAGAGCGGCCGGACCCTGGGGTCCAGGGCTGGTGAACCGATTCATTCCGACTTCAAGAGGAAGTTTGAGGATCTGTTTGATGACGACACCATGACGCAGTATATTTATCACTGTAACGCTCAGAACCCGAGTGGTGAGGTGGGCTTTAAAGCCATGTGTGAGTCTCTCGGCTGGGCCAAGAGGCCGATGGTTCAGCGTGTTCATCTGCTGCCCCCGTCGATGCCCGTCAGCATGCTGTACGGCTCTCTGTCCTGGGTGGACTCGTCCACCGAAACACGGTCGCTCAGATGCGAGGCAGAAGCCCCACCAGCATCACGCTGATCGAAGATGCTTCCCATCAAATCTCACGCCGACCAGCCCGAAGAGTTCAACCGAGTGGTGGAGAGTATTTGTAATACTGTAGACTGAATAAGACGCACATCGGTTTGTAGGTGTgggcatttgtattttttaatgtggGATCAGATTGATAGAAACATTTAAAGGCAAAGCTGTTCTCAGACCTTGTCGCTTCTATTCTAATTTTACTATTTGTGGCCTTCAACGCGGAAAGGCTCTGTGATTGTTCTGCAGGGTTTAACGGAAGCTGGCTGTGTTTGTATATTCGAAGCTATATTTTCTCCAGATTTCTTTTCAATCACGCACTGAGGAGGCTTCGCCGTTAAACCCGTGTCACGAATGCATTGACAATGTTTGGAAAGTCATATTGactaaaagaagaaatgtttaataattcacGAGCGTTTTAAACGattgtctgttgttttttttataatgtgcatATCTCAATATATTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22584 lncRNA upstream 996 25105703 ~ 25169740 (+) False G15225
TU22593 lncRNA upstream 13501 25149255 ~ 25157235 (+) True G15233
TU22605 lncRNA upstream 25730 25123300 ~ 25145006 (+) True G15240
TU22600 lncRNA upstream 55598 25111261 ~ 25115138 (+) True G15236
TU22492 lncRNA upstream 329743 24788885 ~ 24840993 (+) True G15165
TU22618 lncRNA downstream 14732 25190020 ~ 25330287 (+) True G15250
TU22586 lncRNA downstream 24403 25199691 ~ 25206930 (+) True G15226
TU22818 lncRNA downstream 290162 25465450 ~ 25595289 (+) True G15392
XM_043264704.1 mRNA upstream 59960 25089791 ~ 25110776 (+) True lrrc24
XM_043265067.1 mRNA upstream 108226 25051270 ~ 25062510 (+) False eef1da
XM_043265118.1 mRNA upstream 108226 25051270 ~ 25062510 (+) False eef1da
XM_043265142.1 mRNA upstream 108226 25051270 ~ 25062510 (+) False eef1da
XM_043265084.1 mRNA upstream 108226 25051285 ~ 25062510 (+) True eef1da
XM_043222921.1 mRNA downstream 41200 25216488 ~ 25219623 (+) True crygn1
XM_043264772.1 mRNA downstream 46856 25222144 ~ 25236609 (+) True LOC122362952
XM_043264908.1 mRNA downstream 124912 25300200 ~ 25304723 (+) True LOC122363040
XM_043222945.1 mRNA downstream 218868 25394156 ~ 25406903 (+) True LOC122327519
XM_043216497.1 mRNA downstream 240231 25415519 ~ 25419928 (+) True LOC122322894
unassigned_transcript_272 other upstream 120097 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 121050 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 121604 25049050 ~ 25049132 (+) True trnal-uaa_12
unassigned_transcript_269 other upstream 122257 25048397 ~ 25048479 (+) True trnal-uaa_11
unassigned_transcript_268 other upstream 122814 25047840 ~ 25047922 (+) True trnal-uaa_10
XR_006253181.1 other downstream 46856 25222144 ~ 25236609 (+) False LOC122362952
TU22800 other downstream 219043 25394331 ~ 25397882 (+) False LOC122327519
TU22814 other downstream 316972 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 320775 25496063 ~ 25502158 (+) False LOC122362387
TU22853 other downstream 424173 25599461 ~ 25599926 (+) True G15410

Expression Profile