RNA id: TU22581


Basic Information

Item Value
RNA id TU22581
length 2106
lncRNA type sense_over
GC content 0.47
exon number 3
gene id G15225
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25105703 ~ 25210816 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttattttttttttttttttttttttttttttgaAAGTAGacatgcactttatttattcacataaaaacaataatatcaaTCTGAACATTGTTGTCAACAAAGAAATGACAATTTAGCTCGTGCAGTAACTTTATTTCACAGAAACCATATTCCACAAACATTGATCTGTGACTGAAAGTGctgaaataaatcataaacgACTCTTTGTTGGGCAAAATCCCAACACGGGAGAGATGGTAAAGCATCTTTAAACATCTGTATTATTGTAAACGTGGAGGTTTTATTGGTTTCGTGTCCGAGTCGGTCTAAATGATGGCCATGTTGTTGCAGAGGTCCGAATGGCAGCATTTAACTTTCATGGCAGTGTTACTCGAGAGAATAAGACACTCAGTCGTGCTGCTGCATCTCCGAAAGCCCATGACTAGAAGAAACAGAGAAATCAAAACTTTATCTTTACGCGCATAATGATGACGTCACAGCATCAGTCCCCgtcagtgttttttaatttatttattttttgtggtaattttgaaattaattgggaagtaaatgtaaaattctgaagtgaattacattttagattgcattttagattaatacaatgcatttatagATGTGCACAGTGAAGCCGATAGGACTAACCGATTATATAAACGtgcgtataaatagtacgcCGAATAAAAACGAAAACTAGATACCAAAAATGGATTTAAGCGTATATATGATACTTGATGCATAGCATTAGGGTTGTGGAGTAAAGCGTATCATACGCACGCCAAAACGGACGCGTCATATATACgccaaaagaaaaatcaataatagattttttttttattttatttggcgTACATTTTATACGCGTTTTCACGAGAAAGTGCTGGGCAGAAAGGTTGAACTCTCACAGGGAGGGAAGTTGAATCTGGCCGCTATACAGGCATCTTTTCCAAAGCCACAGGTCTCTTGAGTTTGCGTGCAGCGCGTTCCTCCCTGAGGTACACAGTGGGTGCATTTCAGCGCTGATCCTGCAACGCAAAGCGCATGCGCGGTCAACAAATCAGCACGAGCACAAAAAGagtcataaatacagtaaataaatgaaggaaaCGTTGCTCAGTTGTCATTCACTGTACATTTCTCAGTTGTCATTCAAATACAGGTTTCTGAAtactatatgtatgtgtgctatgTGTTTAAACGTATATATTCCAGAAAAACTTTGTgtttatagattaaatatatttctttataatataaattctatgaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttgggtgtgtgtgtgtataaaatacatgtaatatattacTGTACGTGTGTGCATTTCTATACATAGCAAATATGCACAggacacacatatattaagcaaacaaaacttttcttttgcatgcgattaatcAAGATAAatcttgacattttaaaaagcgcaaaccaataaaaaaacgtaaagaaaaaaaaccctaaaacttTGAATGCAATGCAAGCGAAGATACgtaaaatatatcattatattaaaataacactgttattTATGTTCATGTTTAATCTTTTGATTAGCACGTTTCAGCTCACCGTAGTTCAACACCAGAACAAGAACGAGGGCCACCAGCAAAGTCTTCATTGTTCTGCTGATTAGAGctgaaaatattcataataattaaaaatcactcATAGGACTGTATAGGAAAAGACCAAAAAATGGActaatttagttgttttactAACTTACCTCCCAAGCGGTGCAGTACTGAGTGTATTTTAAGTTGATAATAAGCTCTCGTGTGTGTCTCTTATATACTTGTCATGCACTCAGGAGTGAATAATTTCCAGTAATTCAGGAATTCCCGCAGTGTTTGAAACATGTTTATGTGACATTCAGTAACACTGCAGACTGTGTTTGGTCATTTACTCACGCTTTAGCTACAGATGATCGGATCTGACCACATTGTGCGTTTGAGCAAGATCCTGTCCTGTTCTCATATAATAAACCACTTGTTTTTAACATGATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22492 lncRNA upstream 264710 24788885 ~ 24840993 (+) True G15165
TU22524 lncRNA upstream 289273 24813299 ~ 24816430 (+) True G15189
TU22497 lncRNA upstream 308139 24796813 ~ 24797564 (+) True G15169
TU22484 lncRNA upstream 351112 24687556 ~ 24754591 (+) False zcchc2
TU22350 lncRNA upstream 502911 24523424 ~ 24602792 (+) True G15071
TU22818 lncRNA downstream 254634 25465450 ~ 25595289 (+) True G15392
XM_043265067.1 mRNA upstream 43193 25051270 ~ 25062510 (+) False eef1da
XM_043265118.1 mRNA upstream 43193 25051270 ~ 25062510 (+) False eef1da
XM_043265142.1 mRNA upstream 43193 25051270 ~ 25062510 (+) False eef1da
XM_043265084.1 mRNA upstream 43193 25051285 ~ 25062510 (+) True eef1da
XM_043265076.1 mRNA upstream 43193 25051285 ~ 25062510 (+) False eef1da
XM_043222921.1 mRNA downstream 5672 25216488 ~ 25219623 (+) True crygn1
XM_043264772.1 mRNA downstream 11328 25222144 ~ 25236609 (+) True LOC122362952
XM_043264908.1 mRNA downstream 89384 25300200 ~ 25304723 (+) True LOC122363040
XM_043222945.1 mRNA downstream 183340 25394156 ~ 25406903 (+) True LOC122327519
XM_043216497.1 mRNA downstream 204703 25415519 ~ 25419928 (+) True LOC122322894
unassigned_transcript_272 other upstream 55064 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 56017 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 56571 25049050 ~ 25049132 (+) True trnal-uaa_12
unassigned_transcript_269 other upstream 57224 25048397 ~ 25048479 (+) True trnal-uaa_11
unassigned_transcript_268 other upstream 57781 25047840 ~ 25047922 (+) True trnal-uaa_10
XR_006253181.1 other downstream 11328 25222144 ~ 25236609 (+) False LOC122362952
TU22800 other downstream 183515 25394331 ~ 25397882 (+) False LOC122327519
TU22814 other downstream 281444 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 285247 25496063 ~ 25502158 (+) False LOC122362387
TU22853 other downstream 388645 25599461 ~ 25599926 (+) True G15410

Expression Profile