RNA id: TU22800



Basic Information


Item Value
RNA id TU22800
length 827
RNA type TUCP
GC content 0.56
exon number 6
gene id LOC122327519
representative False

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25394156 ~ 25406903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tttggcacGCTCAGACTGGGAGGCCCGTATTGACAGTCACGGCCGTGTGTTTTATGTGGATCACATTAACCGGACCACCACTTGGCAACGGCCAACGTCCGCTGCCACGCCGGATGGCCTTCGCAGGTCTGGTTCCGTCCAACAGATGGAGCAGCTCAACAGGAGATACCAGACCATCCAGAGGACGATGGCCACAGAGAGAAGAGACGAGGAGTCAGGCAGCCCACGCAACGAGAGAACAGCCAGCACCGAGACAGACTCGCCTCCACAGACAACCGaGTTGAGGAGAGACACTCCATGTTCTCCAGGTCACTGTCAGAAGATCACATTACTGCTGCAGAGTCCCGCGGTCAAATTCATCACTCACCCAGAGTTCTTCACCGTTCTCCACGCAAACTATgggGCATATCGTATGTTCACCAACAGCTCGTGTCTGAAACACATGGTCCTAAAGATCAGGCGTGATGCCCGAAACTTTGAGCGTTACCAGCACAACCGTGACCTGGTGACCTTCTTGAACAGGTTTGCTGATGCTCAGTTGGAGCTGCCTCGTGGCTGGGAGATCAAAACAGACCCGCAGGGGAAGTCTTTCTTTGTAGACCACAACAGTCGTGCCACAACCTTCATTGATCCCAGGATCCCCCTGCAAAACGGCAGATTGCCCAACCACCTGACGCACCGCCAGCACCTGCAGAGATTACGCAGCTACAGCGCAGGAGAGgCATCTGAGGTGTCACGCACCAGAGGGGTGTCCTTGTTAGCCAGGCCTGGAAACAGCCTGGTAGCAGCCATACGAAACCAAAGCCAGCAGGAGCCAGTGCCATTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22618 lncRNA upstream 64044 25190020 ~ 25330287 (+) True G15250
TU22581 lncRNA upstream 183515 25105703 ~ 25210816 (+) True G15225
TU22586 lncRNA upstream 187401 25199691 ~ 25206930 (+) True G15226
TU22584 lncRNA upstream 224591 25105703 ~ 25169740 (+) False G15225
TU22593 lncRNA upstream 237096 25149255 ~ 25157235 (+) True G15233
TU22818 lncRNA downstream 67568 25465450 ~ 25595289 (+) True G15392
XM_043264908.1 mRNA upstream 89608 25300200 ~ 25304723 (+) True LOC122363040
XM_043264772.1 mRNA upstream 157722 25222144 ~ 25236609 (+) True LOC122362952
XM_043222921.1 mRNA upstream 174708 25216488 ~ 25219623 (+) True crygn1
XM_043264704.1 mRNA upstream 283555 25089791 ~ 25110776 (+) True lrrc24
XM_043265110.1 mRNA upstream 331821 25051286 ~ 25062510 (+) False eef1da
XM_043216497.1 mRNA downstream 17637 25415519 ~ 25419928 (+) True LOC122322894
XM_043263859.1 mRNA downstream 94378 25492260 ~ 25516180 (+) True LOC122362387
XM_043258956.1 mRNA downstream 173259 25571141 ~ 25574135 (+) True LOC122358952
XM_043258919.1 mRNA downstream 182918 25580800 ~ 25591012 (+) True LOC122358930
XM_043258928.1 mRNA downstream 182918 25580800 ~ 25591012 (+) False LOC122358930
XR_006253181.1 other upstream 157722 25222144 ~ 25236609 (+) False LOC122362952
TU22577 other upstream 219043 25170736 ~ 25175288 (+) True G15224
unassigned_transcript_272 other upstream 343692 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 344645 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 345199 25049050 ~ 25049132 (+) True trnal-uaa_12
TU22814 other downstream 94378 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 98181 25496063 ~ 25502158 (+) False LOC122362387
TU22853 other downstream 201579 25599461 ~ 25599926 (+) True G15410

Expression Profile