RNA id: XM_043222945.1


Basic Information

Item Value
RNA id XM_043222945.1
length 2175
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC122327519
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25394156 ~ 25406903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgtgtatgtACTGGGAGGCCCGTATTGACAGTCACGGCCGTGTGTTTTATGTGGATCACATTAACCGGACCACCACTTGGCAACGGCCAACGTCCGCTGCCACGCCGGATGGCCTTCGCAGGTCTGGTTCCGTCCAACAGATGGAGCAGCTCAACAGGAGATACCAGACCATCCAGAGGACGATGGCCACAGAGAGAAGAGACGAGGAGTCAGGCAGCCCACGCAACGAGAGAACAGCCAGCACCGAGACAGACTCGCCTCCACAGACAACCGaGTTGAGGAGAGACACTCCATGTTCTCCAGGTCACTGTCAGAAGATCACATTACTGCTGCAGAGTCCCGCGGTCAAATTCATCACTCACCCAGAGTTCTTCACCGTTCTCCACGCAAACTATgggGCATATCGTATGTTCACCAACAGCTCGTGTCTGAAACACATGGTCCTAAAGATCAGGCGTGATGCCCGAAACTTTGAGCGTTACCAGCACAACCGTGACCTGGTGACCTTCTTGAACAGGTTTGCTGATGCTCAGTTGGAGCTGCCTCGTGGCTGGGAGATCAAAACAGACCCGCAGGGGAAGTCTTTCTTTGTAGACCACAACAGTCGTGCCACAACCTTCATTGATCCCAGGATCCCCCTGCAAAACGGCAGATTGCCCAACCACCTGACGCACCGCCAGCACCTGCAGAGATTACGCAGCTACAGCGCAGGAGAGGCGTCAGAGGTGTCCCGCAGCAGAGGAGCGTCTCTGGTCAGCAGAGCGGTCAGGAGTCAGTATCAGCCTGATTCAGTGCCTCTAGCTTACAATGATAAGATCGTGTCTTTCCTGCGTCAGCCGAACATCCTGGAGCTGCTGCAGGAGCGTCAGCCGAGTCTGGCCAGGAATCACTCGCTCAGGGAGAAAATCCATTACATCAGAAGCGAAGGTCCTCAGAGCGTTGAAAAGCTGTCCTGCGACGCCGACCTGGTCATGCTGTTAAGTCTGTTTGATGAGGAGATCATGTCGTATATTCCATCTCACTCTTTCCACCCCGGCCTCAGTTTCTCTCCACGCTGCTCTCCTGGATCCTCACCTCAGAGTTCACCGGGCTTGCAGAGGGCCAGAGCGCCTGCTCCGTACCGCAGGGACTTTGAGGCAAAGCTTCGCAATTTTTACAGAAAGCTGGAGGCTAAAGGCTATGGCCAGGGGCCAGGGAAAATCAAGCTCATCATCAGAAGAGAACATCTACTGGAAGGCACTTTTAATCAAGTAATGGTCTACTCACGCAAAGAGCTCCAGAGAAACAAGCTCTACATCACCTTTGTCGGAGAAGAAGGTTTGGATTACAGTGGCCCATCGCGGGAGTTCTTCTTCCTGTTATCTCAGGAGCTGTTTAACCCCTACTACGGTCTGTTTGAGTACTCGGCCAATGACACGTACACAGTGCAGATCAGccccatgtctgcatttgtagAAAACCATTTGGAATGGTTCCGTTTCAGTGGCCGTATTTTGGGTCTGGCTCTGATCCACCAGTATCTGTTGGATGCCTTCTTCACTCGACCGTTCTACAAGGCCCTGCTCAGACTAGTGACAGATCTGAGTGATTTGGAATACCTGGATGAAGAGTTCCATCAGAGCCTGCAGTGGATGAAGGACAACGATATCACGGATATCCTGGATCTGACGTTTACAGTCAACGAGGAGGTCTTCGGACAGGTCATAGAGAGGGAACTGAAGTCGGGAGGCTCCAATACCCAAGTGACGGAAAAGAACAAGAAGGAATACATTGAGCGCATGGCGAGATGGAGGGTGGAGAGGGGGGTTATGCAGCAGACCGAAGCCCTTGTAAGAGGTTTCTATGAGGTTGTAGACTCCCGTCTGGTTTCAGTGTTCGATGCTCGTGAGCTGGAGTTGGTCATTGCAGGCACGGCTGAGATCGATTTGAATGACTGGAGATCCAACACAGAATACAGAGGAGGTTACCATGATGGGCACGCTGTGATTCGTAGTTTCTGGGATGCGGTGGAACGCTTCAATAATGAACAGAGGCTGCGCCTGCTGCAGTTCGTGACGGGAACGTCCAGTGTCCCTTACGAGGGTTTCGCTGCGCTCCGTGGGAGCAACGGCCTGCGGCGCTTCTGCATTGAAAAGTGGGGAAAGATTACCTCTCTGCCAAGATCCAAAGGCTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22618 lncRNA upstream 63869 25190020 ~ 25330287 (+) True G15250
TU22581 lncRNA upstream 183340 25105703 ~ 25210816 (+) True G15225
TU22586 lncRNA upstream 187226 25199691 ~ 25206930 (+) True G15226
TU22584 lncRNA upstream 224416 25105703 ~ 25169740 (+) False G15225
TU22593 lncRNA upstream 236921 25149255 ~ 25157235 (+) True G15233
TU22818 lncRNA downstream 58547 25465450 ~ 25595289 (+) True G15392
XM_043264908.1 mRNA upstream 89433 25300200 ~ 25304723 (+) True LOC122363040
XM_043264772.1 mRNA upstream 157547 25222144 ~ 25236609 (+) True LOC122362952
XM_043222921.1 mRNA upstream 174533 25216488 ~ 25219623 (+) True crygn1
XM_043264704.1 mRNA upstream 283380 25089791 ~ 25110776 (+) True lrrc24
XM_043265127.1 mRNA upstream 331646 25051286 ~ 25062510 (+) False eef1da
XM_043216497.1 mRNA downstream 8616 25415519 ~ 25419928 (+) True LOC122322894
XM_043263859.1 mRNA downstream 85357 25492260 ~ 25516180 (+) True LOC122362387
XM_043258956.1 mRNA downstream 164238 25571141 ~ 25574135 (+) True LOC122358952
XM_043258919.1 mRNA downstream 173897 25580800 ~ 25591012 (+) True LOC122358930
XM_043258928.1 mRNA downstream 173897 25580800 ~ 25591012 (+) False LOC122358930
XR_006253181.1 other upstream 157547 25222144 ~ 25236609 (+) False LOC122362952
TU22577 other upstream 218868 25170736 ~ 25175288 (+) True G15224
unassigned_transcript_272 other upstream 343517 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 344470 25049604 ~ 25049686 (+) True trnal-uaa_13
unassigned_transcript_270 other upstream 345024 25049050 ~ 25049132 (+) True trnal-uaa_12
TU22814 other downstream 85357 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other downstream 89160 25496063 ~ 25502158 (+) False LOC122362387
TU22853 other downstream 192558 25599461 ~ 25599926 (+) True G15410

Expression Profile