RNA id: TU22818


Basic Information

Item Value
RNA id TU22818
length 603
lncRNA type read_through
GC content 0.30
exon number 2
gene id G15392
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25465450 ~ 25595289 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAAGCTtgataacattttgttttaaataagtagCACACTTACAAAGCCCACAATGTTTtatattctctctttttttattagttagttttctatttttcataGAAAACATATAGTAATAGGAAcatattttccttttgttttaagGGTCAGATAAACCAAACCACAAAGCTGCAAAGCTATGTTCCTGAAAGCTAGGTTTGCATATTTGGTGAGTAATGTCTTGTTGCAAAAAATTGGTTTAACGTCTGAACTTTGCAGTCAAATGTATGTGCAACATCTGAATTATCATACAttgaaaaaatagaaattagCTGCCTTTGTATAGATATGAACCACAGAGAGTCCACATACATTTGACTGCAAAGTTCAGACGTTAAACCAATTTTTTGCAACAAGACATTACTCACCAAATATGCAAACCTAGCTTTCAGGAACATAGCTTTGCAGCTTTGTGGTTTGGTTTATCTGACcctttaaaacaaaaggaaaatatgTTCCTATTACTATATGTTTTCtatgaaaaatagaaaactaactaataaaaaaagagagaatataAAACATTGTGGGCTTTGTAAGTGTGctacttatttaaaacaaa

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22618 lncRNA upstream 135163 25190020 ~ 25330287 (+) True G15250
TU22581 lncRNA upstream 254634 25105703 ~ 25210816 (+) True G15225
TU22586 lncRNA upstream 258520 25199691 ~ 25206930 (+) True G15226
TU22584 lncRNA upstream 295710 25105703 ~ 25169740 (+) False G15225
TU22593 lncRNA upstream 308215 25149255 ~ 25157235 (+) True G15233
XM_043216497.1 mRNA upstream 45522 25415519 ~ 25419928 (+) True LOC122322894
XM_043222945.1 mRNA upstream 58547 25394156 ~ 25406903 (+) True LOC122327519
XM_043264908.1 mRNA upstream 160727 25300200 ~ 25304723 (+) True LOC122363040
XM_043264772.1 mRNA upstream 228841 25222144 ~ 25236609 (+) True LOC122362952
XM_043222921.1 mRNA upstream 245827 25216488 ~ 25219623 (+) True crygn1
TU22800 other upstream 67568 25394331 ~ 25397882 (+) False LOC122327519
XR_006253181.1 other upstream 228841 25222144 ~ 25236609 (+) False LOC122362952
TU22577 other upstream 290162 25170736 ~ 25175288 (+) True G15224
unassigned_transcript_272 other upstream 414811 25050557 ~ 25050639 (+) True trnal-uaa_14
unassigned_transcript_271 other upstream 415764 25049604 ~ 25049686 (+) True trnal-uaa_13
TU22853 other downstream 4172 25599461 ~ 25599926 (+) True G15410

Expression Profile