RNA id: XM_043216818.1


Basic Information

Item Value
RNA id XM_043216818.1
length 6056
RNA type mRNA
GC content 0.49
exon number 24
gene id clcn2a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8439879 ~ 8486904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTCGACAGCTGGATAGGCTGCTGGGCTGTTTTCTGCGGAGAGGGACCTGTTACTCAGTTCATGCTGCTTGTTGAATTGCGTCCCGGTGATGCAGATGTGATCTTGTGGCTTGGGAATACCGTATAgcgtttaaatatttcatccgCGCTGTATTCACGGTTATGGCGCGAGACCGAGCCCCTCAGCGCGTGCTCCAATATCAGCAAACTCTGATGTATGGACGCTATACACAGGAGTTGGGGGCCTATGCCAAAGAAGAGGCAGCTCGTCTGCGTGAGGATGGAGCGCTACGGAGGACCGCCAGTGTGCGTGGCCAGGCTCCAGAACTGCTGGAGTATGAGAAGGACCCGTGTGCCAAGTGTCAAGTCTGTACATCACGGTGTCAGAAGTTCTTGATTTCCCGTGTGGGTGAAGACTGGATCTTTCTCATCCTCTTGGGGCTTCTCATGGCATTGGTCAGCTGGGCCATGGACTACACTATTGCCTTCTGTCAGcaagCACAGAAGTGGATGTATGGTGGTCTGCACAGTAACATGTTGCTGCAGTACCTGGCCTGGGTCACTTACCCAGTGGTTCTCATCACCTTCTCCGCCGGCTTCACGCAGATACTGGCGCCACAGGCAGTGGGCTCTGGGATCCCAGAGATGAAGACCATTCTCCGAGGTGTGGTGCTGAAAGAGTACCTCACTTTCAAAACCTTCGTTGCCAAAGTGATTGGCTTAACTTGCGCCCTTGGAAGTGGCATGCCTCTGGGCAAAGAGGGACCATTTGTTCATGTTGCCAGTCTGTGTGCTGCTCTGTTGAGCAAATTCATGGCCTTGTTTGGAGGAATCTACATGAACGAGCTGAGAAACACAGAGATGCTGTCAGCTGCTTGTGCGGTGGGGGTGGGCTGTTGCTTTGCAGCCCCTATTGGAGGAGTGCTGTTTAGCATTGAGGTCACATCTACGTTCTTTGCCGTGAGGAACTACTGGAGAGGATTCTTCGCTGCAACCTTCAGTGCCTTTATCTTCAGGGTGCTGGCGGTGTGGAATAAGGATGAGGAGACAATCACGGCTCTGTTCAAAACGCGCTTTCGGCTGGACTTTCCCTTTGATCTGCAAGAGCTTCCAGCTTTTGCTGTGCTCGGgattgcCAGTGGTTTTGGGGGAGCGCTGTATGTCTACCTGAACAGGATCATAGTAGAATCTATGCGAAAACAGAAAACCATCAACAAGTTTTTGCTAAAAAAAAGACTAGTGTATCCAGCAGTGGTCACTCTTCTTGTCTCTACGCTCACCTTTCCTCCTGGGTTTGGGCAGTTTATGGCAGGCCAGCTGACTCAACATGAGTCACTAGTGGCACTGTTTGACAACCAGACCTGGTACAAGCAAGGTGTTGCTGAGGAGTTTGCGTACTCAAGTCACGTACCTCAGGCCTGGAAGCACCCACAAGTCAGTGTGTTCATCACACTCCTCCTCTTCATTGTCATGAAGTTCTGGATGTCAGCTGTGGCCACAACAATGCCTGTGCCTTGCGGGGCCTTCATGCCGGTTTTCCTCATTGGGGCTGCGTTCGGTCGGCTGGTGGGCGAGAGCATGGCTGCCGTCTTTCCCGAAGGGATACACGCCGACAGCACTGTATATCCCATAGTTCCCGGCGGATACGCAGTTGTAGGGGCGGCGGCTCTTTCTGGCGCAGTCACTCACACCGTGTCCACCGCCGTCATTGTGTTCGAGCTGACCGGCCAAATCTCGCACATCCTGCCCGTGATGATCGCTGTGATATTAGCCAATGCCGTGGCTCAGAGTCTGCAGCCTTCCCTCTATGATTCCATCATCCGGATCCAGAAACTTCCCTACCTGCCAGAGCTGGGCTGGGGACAGGAGAAATATAATATCCGTGTGGAGGACATAATGGTGAGAGACGTGCGGTTTATCACTCTCTCCTCATCTTACCGGGATCTGCAGGAAGCTCTCATAACAGGCCAGCTTAAAACCCTGGCCTTGGTGGAGTCCAAAGAGTCCATGATCCTGCTGGGCTCTATGGAGCGCTCCCAGCTGCAGTCCCTGCTCTCGCAGCAGCTCAGCCGAGCTCGAAGGCTGGAGTACTTGAGAGACCGTGCTCAGGACAATGGCACCCATGTGCCAACCTTCCCCCAAGACTCTCCCCCAAGGACCGGCCGTGGCGTACGCTTCCTGatctCCACTGAAGAGTCCTCCTACAGCCCCACACTGACTAACTCCCAGATCCCCCTCAAGTCTGCTCTGAAGACGGTGTCTGCAATCAGCAACACAGAGTCACTGAACAGCTCTCCAAACCTCTCCTCTGGGGAACCTGTGAAGGAGCTAGTAGAGAGCAATGCTGGCCCCATGGCTCCTAAGAGGAGCAGGAGGCCCAAGCGTGTGAAGATACCCATGGCGGATACACCTGATGTTGAAGATGATATGTCAACAGCAGAGATAGCAGAGTGGGAGGAGCAACAGTTGGATGAGGCTGTTAATTTCAACAACTGTAAAATAGACCCGGCCCCCTTTCAGCTGGTGGAACGGACATCTTTGCATAAGACACACACTATTTTCTCACTACTTGGCCTGGATCATGCCTATGTCACCAGCACCGGACGTCTAGTAGGAGTGGTCTCTCTAAAAGAGcTTCGCAAGGCCATCGAGGGCTCTGTAACGGTGACCGGCGTGAAAGTCCGTCCCCCGCTGGCCAGCTTCCGGGACAGCGGCAACAGCAGCAGCGTCTCAGAGGTCACCGAGCTCCACAAGCTCTGGAGTCGTCACAGGAGCCTGTCTCTCCCACGGGAACCTAACCTCCCCGACCTAGACGACCAAACGGAGCAGCCGTCCGAGGGCAGCCTGGTGAACGAGACCGAGTGCACGGAGCTGTCCAGCCAGAACAGCCCGTTACACACAGACGACCAATCAGAGCTGCCCTACGCTGACGCCACGCCCCAAGAGGAGCTCCCCTGTGACTGTACCCACCCTCTAGAGGACGGAGGCTCGGAGGCCGTCGACGAGCAGAGCCCAGCTCCGATGGAGGAAGCGGTGAGCGAGGGAAGCCCCTCGCCCTCGGAGGGTCAGCCGGAATGACAGCCGCTTGCGGTCGGTAACGCACACTCCATTTACACCATAAACGGGATTGTGAAGTCAGGTTGAGGAGAACCTGGAGGAAGTCTTTAAGCAGTGAAGCACACTCTCTGCTCCGTACTAATCAAACCAACCCTAATCTCTGGTCCTGCCTTCACACGAAGCACGCCGTGTGTGGGATGTCATAGATACGCGCTGCAGTGTGAGTGCCGTGTGGCTTCGGATGGGCTCGTGAGCGATCGTCTGCGTGTTCCTCATCAGTTTGGGTGTCTGTCGATTTGTGGCTTCGTAGCGCGTTTCGCTGTTGATTTACGTCGATGAGATTCATTTAAAGAAGTTTATGTTAGACGATGTCGGCGGGTTTTCATCATAAAACGTGTCTGTTCGTTGATTTGTGGCacgcttgtgtgtgtttcttcgTCTTTGCGCAAGCGACAGAGTGCGTAAGAaaagcagagtgtgtgtgttgcgaGAGTGACTCAGCTGCACCTAGCCAACGCACCCATCTGGTGCCGACACtttaaatccaaataaaatTGTCTCTGAGAGCCAAACTACAATTTTGCTCTAAATATAGCCCTTAATAACCCACACTGCAAGGAAACACGGAGGGAGAGAGCGGGGGAAAGAAAGGGAACGGGTGGGCAAAAGAGGACGGAGAAGACATGGAGAGAACAAGGACGTGATGCAAAATGAGCGAAAGACAGGAAGGACACAGAGTGGTGGAAAGGCAGGAGAATGAATGGGAGAGCGGGGTAAATTGTGCCACTTTTTATTTAGACTGTCAAGCAGGCACTAAGAAGCAAGTCATGAGGGAAGTGAATGTGCTTGATTTATATTTCAGAACAGATCAATCAGGTAAATTATGGacatttaatgaacatttatcttttttgaTGCTCAGTATTCACACAAAATCCAGTGTCTTTGCAtgtacattttatcatttttattgttttccctGCATTTTGATTTGCATTTGACACACTTTTGGGGAAAAGCAAAATATCAGTTTCCAATTCCTTgctaaaaagtattatatttatgATGTGATTTAACAATTCATAGCATGTTCTCGTTTTCCAGGCTGGCAATAGaacaaaatgtgtaataaatatttttagacatggatacatttttttttttttttttagtttactttgACATGcctttttttgacaaaattgACATCACAGGCAGTGGTCATTTGGACAAAAATCATCCAGTTTGCTAGATTACAGGGATGGCATATCTTACCCCACTCTCCCCTACAAAACCAACAGCGACTCACACAGAGGAGTTTCCAACCAGGGTAGTTTCGAAGCACATTGTAATTACCattcaaacaaaacacagcaatacacGGGCGTTTTCCATACTGACagcatcagaaaaaaaactccTTCAACAAAGCATCGAGCACACGGTTTGGATAGTGTTGCCTGTAATTACGAGTAATGATATCCCACAATATGTAGGCACGTTAAGCATGCTCAGATCTGTATCAGGACCAGTTTGTAGCATAATTGCCTGgccatgtaaaatgtattaaagcatCTTCTCGAGAAGTCCGAAATACTCAGAGAGACTGTGGAGAAACGGAGCCTCTTAAATTCTTAATTATATGCATGAACCCCGATGCAATCATTTGCATGCTCACACACGCGCATAATACAACACGCATCAAATCGCTTTCCAGCCAGCTTTAATTGACTGCATAGGCCTGTTTCGCGTTACCTCATCGGGTTTACTCTCATGgcctttttgctttttcaaGGCCAGATTTGTTCAGAAATCCAGAGCGCAATTCTCTTCCGCACATGCTCACGATGCGTCAGAGATTTCGACGGCGGTGTAGATTGAGGGATGTTTTTCGACGGCGTTAGAACCAGCCTTTGTATAAATACCATTGCAGGGAGTTTGTGTGGTCACTGTGCAGATCTCACCCAGCAATCATCGAAgtattcaaatgtaattcattACAACGATGGATATTCTGTGTACACGCGGTCGCGTCTTATCCGAATTGTTTTGCATATGCGCAAAGCTTTCTACGTTCGATTTTTGAGCTGCCAACCGTGCAATAATGTCGTTTTAGAATTACTGCTTGCCGAATAGGGTTATTTTACTGAACGCTGGCTCTATTTCTACAGTGCATATAATATCGGAACTGTTTGCAATAATGCACATCTTGAACGCAGGTAAATGCCTTCGGATTTCGTTTTCACAACTTGTAAAGTGTTTACTGGACCTCGCCGGTGGAGTTTTCACTAGCATCAGCCTGAGAACGATGCCTAACGTTCTGTTTGCATCGAAACTGTGGCTGAACGACGCTATGCAGTATGGTCAAGAACAGCACAACTACCCCAGACACAGCCTAAGCAGAGCTAAACGGAGAATGAGTTacgtttctttttcttgtgCACTGCAGAAATGGGAGGCTACGGGTTTGATTTAAACGGATCAAGGCAAGTGGACCAAAACCATAACCATGACACCGACTTCCTGACACAGCCTTTTCTCATTCTCTCAGAAACGTCTGCTGTGGGCCCCCGAGAGCTAAACGTTTCCTCGCCATTTATCCGGCTGCACTAATCAGCTGTTTTATTAACGTCCGTTATCCTGACGTGGGACAGGAGTAACTTAAGCTAATAACGATCTTTAGATATGTTGTGTCACGTTTTGTCTCTGTTTGCCGCTTGTGCAGTTTAAGTCAAGCCCCACGGTGTGTAAAGTGTCTGCTATTATGCCGCACATTCAGTGTAGAGTTAAGCAATAAGTCTGCTCCCATATCCGTAAATggtttttataaatcatttgcTTGTACAGAATACAGGGTAAAGCGGTATGTATATGAACTCTACTCACATACCCTGTACATATAGAGATAAGCATATTGAATCAGCTGTTaccattatttttcagaaaacatgaaattgtTTTGTACAtcagtaaatattaaatttcaACTTTAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15209 lncRNA upstream 180347 8219265 ~ 8262830 (+) True G10219
TU15180 lncRNA upstream 352641 8081817 ~ 8090536 (+) False G10198
TU15220 lncRNA downstream 35498 8522402 ~ 8528707 (+) False G10226
TU15223 lncRNA downstream 35498 8522402 ~ 8528707 (+) False G10226
TU15224 lncRNA downstream 35498 8522402 ~ 8528707 (+) False G10226
TU15228 lncRNA downstream 35498 8522402 ~ 8528707 (+) True G10226
TU15298 lncRNA downstream 73194 8560098 ~ 8561513 (+) True G10271
XM_043263798.1 mRNA upstream 39963 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA upstream 39963 8386877 ~ 8403214 (+) False cc2d1b
XM_043263803.1 mRNA upstream 39963 8386877 ~ 8403214 (+) False cc2d1b
XM_043263850.1 mRNA upstream 60734 8373238 ~ 8382443 (+) False elovl1a
XM_043258048.1 mRNA downstream 103337 8590241 ~ 8599595 (+) True atp1b3a
XM_043222148.1 mRNA downstream 143508 8630412 ~ 8651546 (+) True atr
XM_043253247.1 mRNA downstream 165013 8651917 ~ 8662323 (+) True amer3
XM_043262402.1 mRNA downstream 343916 8830820 ~ 8841734 (+) True LOC122361595
XM_043259139.1 mRNA downstream 361423 8848327 ~ 8877202 (+) False LOC122359011
TU15202 other upstream 335400 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 860792 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1456058 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 1750802 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 1752398 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 675707 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 1259690 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1424724 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1424724 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 2224226 10711130 ~ 10718194 (+) True G10979

Expression Profile