RNA id: XM_043216938.1


Basic Information

Item Value
RNA id XM_043216938.1
length 6667
RNA type mRNA
GC content 0.48
exon number 21
gene id si:ch211-207d6.2
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13939270 ~ 13992324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCAGTAGTGCAGAGAGTAGAGCAGTGGGCGAGACACTCGTATATTTAATAGAGGGAGGCAGTGTGAGCCTCAGACCGAACAGGATACACATGCAAACTGACTCGGAGGGCATTTAGAGCTGAGCCAGCGAGAAGCAACCAGAGGCTGTGCTCCCATGAGGATGTGGATAGCCACAGCAGAAAACAAAGCAGTGCAGACGAGAGCGAGCAGTCAGACCCCTGGTCCCCTCGCACGGTCCCCAGGAGACACACGGTAGGAGGACCTCGCACTGCTGGGGACGTGATCATCATGCAGTCCTACAACATGGACCACAAGAAAGAGGCCTTTCTTGAGCACCTGAAACAGAAGTATCCCCACCATGCTTCTGTAATTATGGGGCACCAGGAAAGACTCAGAGACCAGATCAGGAGTTCTGGGCACAGTGTAACCCCTCAGTCTGCTCTAGGGGAGCCAGGGGAGCATCTCTCTTTGGCCTCTCTTGAGTCTTTGGAGGCCATGTCGGAGGGAGAAGCCCCCTCCGCCTTCACCCGAGGCAGCCGCTCCCGAGCGAGCCTCCCCGTGGTCAAGTCAAATAACCAAACCAAGGACAGGTCATTAGGTGTCCTCTACCTGCAGTATGGAGAAGAGACTAAACAGATTCGAATGCCCAATGAGGTGACGGGTGCAGACACCATCAAGGCTCTGTTTGTCAGTGCCTTCCCTCAGCACCTCACTATGAAGACACTGGAGTCCCCCAGCGTGGCTATTTACATCAAAGATGACATGAGGAATATGTACTACGAGTTGACTGATGTCAGGAACATTACGTCACAGTCTTGCCTGAAAGTGTATCACAAAGACCCAGCCCAGGCTTTTAATCACAATGCAAGAGCCAATAATGGAGAAATTAGGATCACAAGAGAGCGGCTCTACAGCGGCAGACAGCAGCCTGGAGGCCAAAGCCCAGTGCACACTCTGCCTCACAGTCCCATACATTCAGTCCAGGGCTCTATGTCTCCTCCTACACCTCGCTCCATGCCCTCATCTCCTTCCAGGATCCCTTTCGGTCACTCTGTTGCCATGCCCGGTGGCGCCACCTTACCCAGGGACCGCATGTCCAACGCGCCCCCAAGTCGTTCCATCACACCGTGCTCCAGTGCCATCCTGGAGCGACGAGACGTGAAACCAGATGAGGATCTGAGCAGCAAGAGCACTCCTTTGTATCCAGAAGCATACGGTTCACCTGAGGCCAGGCTCAGCGTTGCCTCATCGCAAGGCAGCCATACTGGAGACGTCCCGGATGGGGCAGCCTACATCCAGCACCGCTCCACTATCAAGTCTGTAGGTGCGTACACAGATGGCCAGGATCTGCAGCACTCTCTCTACAGACAGAAATCTCGCAAGTACAGTGAGAGTCAGCTCGCCTCCATGGGCTCCAAAACGCCGCCTGCCTCTCCTCACAGGGTCAATGAGGTCAGAATGATCGACATGCTCCCAGGCCAGAACTCCCACATGGCCTCACAAGGTGTGGCAGCGGAAAGAGCGTCACCTGTGAGAAGATCTTTCCGCAAGGACAGTAATGGGGCCGTGGAGGTGGCGACCAGGGTGAGAGGCAATGTGGCCTCCCCTGTTTTTGCCGACCTTCCACCCAGTCACGGAGAGAGGCCTTTTCAAGGACACGTGGCAGCTGGAGATCCTCAGAGTGAAAGAATAAAGGCAATGGAGCAGCAGATAGCCAGTCTTACTGGACTCGTTCAACACGCTCTCATGAAAGGGCCAAATACAAGTGCCAAAGAGACTTCCAGTGAAAAACCAGTAAAGATGGCTTCTCCGTCACAGAATGGTGGCGTCTGTACTATAATATCATCTGAAGACCCAGTTGTGCAGACAGACATTATTTCAGCACAGGTTCAGCTTCCTGTCAGAGACCCTGCTATATGCTCAGTCCTCTCTACCTTCAGGAGAAACGTCTCTGACCTCAGACTGCAGCTCCATCAACTCAAACAGATGCAGCTGGAAAACCAGGATGCCATGAGGCAGATGCTGCTGCAGGTAGAGCAGGAGATCTCAGACAGGCTTTCAGACTCTTTGCCGCACACCGAGGACCCTGTTCATAGACAACGAGTCCAGGTGGAAGAAGAAAGACACAGATATCTGGGCATGGAGGAGACGGTTCTTGTGCAGCTCGGAGAGCTGGAGAACTATGTGGAGATGCTCAAGAAAGAATCCACCTGTGCCGTGAGCAACCGACCGGTCACTCTGAAGGATGTGGAGGAAGGGGCGGTCAATTTAAGAAAAGTAGGAGAAGCTTTGGCCACACTCAAAGGAGAGTTCCCAGCCCTGCAGATGAAAATGCGTGCTGTGTTGAGGGTGGAGGTCGAGGCGGTGCGCTTCCTTAAGGAGGAGCCGCACAAAATGGACAGCATGTTAAAAAGAGTCAAAGCCCTGACTGACGCTCTCAGTGGACTGAGAAGATACACCACTGAAAGCCACAACCATACTCCTGACACAGTCCAAGGCAAGGCGTCACCAGCTGATTCAGTTTCCTATGTGGAAGAGTACAGATCTCCAAAACCGGTTTGTGAGTCCCCCACCCCACAGCCAAGATCACCTGCCAAAGTCAGCTGTTCAGAGCCTGTGCCATCTTCTCCAGTCAATGTGCACCGCATTCAGACGGCTCCCATCAGCACACACCACCCCAGTCCCCCGCTCACACCCACCCATGGCAGGGACTCCCCCACTGTGGCCAAGGTCAGTCCCAGGAGCAGAGAAAACAGCCCTGCCTTGCAAAAGAGAGCAGGTCCGCAGGGACAGGAAGCTGTGCCAGCAACCGAGGCCATCAGCACGACTGGATCCTCCTCAGCAGAGGAGATCTCTGTCAACACGAGCAGGCCCGTGCCTGAAGAGATTTCAAAACAGGCAGCAGTGGAAGACAAGACTCACTCTACTGGGCTAGGAGCAGAAAAGGAAATGGAAAGGATCCTTCAGCAGACCCAGGCCAGCCTTATGAAGGCCATACCTGACCTGGAAGTGAGCAAACAGGTGGACAGCACCCCCTCCCAACCTCCTAGCATCTTGCCGGATGAGGTGGACTCTCCACATCCTGTGTCTCCACTCCCTGAAGCCTCACCACGGGATGGACCGAAAGCAGATAAACCAGTCCAGACCAGTTTGGAGAGGCCACAGAAGCCGACCATAGAGAAGCCCCACAGGGCCAGTGTTGACAGAGTACAACCCAGCCCTGAAACGGCCAGCAAATCACCTCCCCCTCCCCCTCCACGCAGATTCTACGCCTCTGGAAGCGGACTCACCACTGGACGTTCAGGAGAGGTGATCTACACCACCCGGAAAGAGTCCACGAGCGCACAGGAGGGTGAAGAGGAGGCCCCGAAGCCCAAACCCTTGCGTGTGCCCCCAGAGGTCAAGCCCAAGCCTCGCACCCCTCCTCCTGTCAACACCTCCACCTTACAAGATGAAGAGGATGAAGGAGATAAGATCATGGCTGAGCTACAGGACAGAAAGCTCACCCGTACACAGCCTAATGACCGTACCCTTACCCATCCTCAGGTGTTTCAGaagtgcacaaaaaaagatttacagcCCAGATATATTGTTGATCTCACAACCCGTGAGCCCTCAGACAGTGCGATGGAGCCAGGGCTTTCCCTGTCTTACCACACAAAGCAGACCACCTCTCATCTATCTGAAGAAGGAACACTATCTGAAAGTAAGGAAGATAGTGCAACACCTGGTTCACCTGagGTCATGTATTATATCACTGGAGCAACAAAAACATCAAGGCAGAGCACCTCTAGGCCAGAGGACCTAAAGGAGCCCAAGGAAGCAACTTTTTCTCCTTCAAAGGTTGCACCTGAGAATGCTTCTGACCTTTCCCAGcagcaaattttttttaaatcaaatgacttATCTGTAATTTCACTTCAGCCAAGCCAATCAGTCAAGGAGGCCCAAAGCAAgctaaataatatacataaggTGCCATCTGGCCCATTTAGCTCTTTAAAGAATGGCACTGAAGCTGAAAAAGGGTCATCACTCATTAATCCCAAAGAGTTCAAGACTGAATCAGTGCTGAAGTCCCTAAAGCAGGTTGTTCCTACACCTTCTGAGAAAGTTTCACCTGTTGAGGAGAAGTTAGAGCCGCAGATACTGCATACATCTCCTGAGCAAGCCGCACCTGTTATGGATAAGTCAATAAAGCATGGACATCGCACAACCACTGTTCAAGTTACACTTGTTAGCAAGATTCCACAAAGTGCTGAACTTCAAGTTCACTCACCAGTCTTTCAGCCAAACACTGATGCCTTATTTTCAACACAACCAAATGACTATAGGAGTGAGCAGGATGTAACAAAGAGATCATCTGAAAATCAGGCCAGATACACTGAGGGGGCCAGTTTAAGTCCAGACCTCCCAGGAGAAGAAGGTCCTCCTCCACCAAATAACATTGCCTTTAGGATCACTAAAACAAAGGTACAGGCTCTATCAACTGGAGAGTACCAACAACTAGTAAACAGTAAAGGCACAGATGTCCAAACTGTTAAAGTGGGCTCAGAACCAACTCTGTCTGCCCCTGAGGACTCTGGAATTGACAAGAAGCCAGTTATCATAATTTTTGACGAGCCTATGGACATCTGCCAGGCCTATAAGCGACTGTCCACCATTTTTGAGTGTGAAGAAGAGCTGGAGAGGGTGCTTTCAGAAGAAAGGATAGAGGAAGAAAACGAGGAGGAAGTGGAAGCCAACTCAGTTCAGGTCGGTCAGATAATGCTTAGAAATAATCTAGATCAGTGCAGAGGTGAGAATAGGGTAAACAATGAGAGAAGTAGTAGCGTTCCAGTGCCTCTACAACAGCAGAGTTCCTTTGAGAGTCCTGCTCCTACTGTTGAGGAAGGAGGCAAAACAGAATCTCCTAAAGATGCGAAAAAGAAATTCAAGTTTAAGTTCCCCAAGAAACAGCTTGTAGCTATTGGCCAGGCTCTTCGTACGGGAACAAAAACTGGCAAAAAGACACTGCAGGTAGTTGTCTACGAAGACGAAGAGGAACCAGATGGAACCGTGACGGAGCTCAAAGAAGCTAAAAGGTTTGAGATCAAGTCCCACACAGACTCTGATTCTACCACCCCTAGGTCTTTATCGCAAAACCAGACTACAACATCCCAGAGCACTAAAGACAGAACTGAGGAACTCCGTAAGACTACTTATCAAACATTAGACAGCCTTGAGCAGACCATTAAACAGTTAGAAAGCACCATAAGTGATATTAGGCCTACATTGGTTTCTGAAGTTTCCCGCAAAGAGGAATCTAAAGCAAAGAGAATGGCCAGTGATGCAGAACCAGAGGAGGGCAGTCCCACAAAAAAGCCAGCACCTCTGCCCAAACCCCACAAGTCATCTCTGCAAAAGAGATCCAAAACACAGTCTCGGTCCTCTTCAAGCACGTCCTCCAGTTCCTCCAGCAGTAAACAGAACTCTGGTGACTCTCTAGCTTCGAGTCGGATTTCCTCACCCAAGTCTCGCCAGCAGCCAGCAGGGAGTGTGGAAAAACCCGGAAAACCTCAAAAGCTCCAGGATTCCCAGAGGCAATTCCGTCAGgatTCTGCTATTCTTCTTAGAAGCAAATGACTGGGTCAACAAAGCACATTTGTAAATTTGTACATGTTCACGCTTCTGTTGAAGCATAAGGTGCTTTATGGATCATCTCAAATCATGCTGGAGAAAATGATTATTAGCTTTTACAcatacttatattttatgtagAACATGGTGTATTGAgtattaaaaaatgctattttaccAGGGGCCTCGTTTATAAAACGTGTGTACACACAGATTTCATTAGAGAGTGTGTTAGCTTAAATCCACGCCAAAGCTCGTATTTACAGAAATCATTGTTGACGTGAAAAAGTGCGCACTGTAGTGagtattgcaggtttttgaaaatagtAATGATGTTAATTAGGAGTCGTTTACAAGGCAGACAGATGAAACCATTTATCTGCACaaattttctgtatatttctgcATATCTGAGAAATGCGATCTAATTTAGGATCACTTCtgcgcaacattttataaatgaggcccctggTGTTTCAGACTTTTGGAGCCCACTCTGTGTCTATCAGAAATGGTTTAACTTGTTTGTGGTGATTGATTTGATGGTTTGAAAGAAATTTTAACCAAATGcaatctgaatttttttttttttttgccttcagTGCACTGccagttttaaatatatgcagtttGTAGTGTTATGCCATAAAACcagacagttttgtttttcatttaaaaataaaggtgtatATACTGTAGTGTGAGTGGATGATGTGCAACCATCGTAGTGGTTCTGTAGCCTATAGCTTTGTGTTACTTTATACTTGTACTCCTTCAAATAGCTCATGTCGAATTCCAATCAATAtagtgatttacattctaaattgctaaatattattctcaaaaatattggctatgaaaataatgttttaaattgccAAATGTAACTCCTATGCATGCTTTTCAGATATTTAACCATGGATACTGCAAAGGtaaatgctgtaaatattaCCTCTGATTTTGTAACACTGtataaattgtacaaaaaataGTTTGGAAGAAAATGCTTGCCAGAGATGTTTATCAAATAAAGGGCTTCCAGtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17503 lncRNA upstream 34142 13904568 ~ 13917191 (+) True G11812
TU17458 lncRNA upstream 250007 13694319 ~ 13701326 (+) True G11779
TU17390 lncRNA upstream 484372 13315229 ~ 13466961 (+) True G11740
TU17521 lncRNA downstream 2467 13994791 ~ 13995373 (+) True G11823
TU17513 lncRNA downstream 10221 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA downstream 56393 14048717 ~ 14051620 (+) True G11836
XR_006252504.1 lncRNA downstream 99240 14091564 ~ 14098847 (+) True LOC122357607
XR_006252505.1 lncRNA downstream 99240 14091564 ~ 14098847 (+) False LOC122357607
XM_043219234.1 mRNA upstream 47083 13902910 ~ 13904250 (+) True ptf1a
XM_043253272.1 mRNA upstream 58648 13835218 ~ 13892685 (+) True dlgap1a
XM_043222213.1 mRNA upstream 528170 13411296 ~ 13423163 (+) True LOC122326989
XM_043263883.1 mRNA upstream 653188 13259743 ~ 13298145 (+) True cdh18a
XM_043254324.1 mRNA upstream 738207 13174143 ~ 13213126 (+) True cdh12a
XM_043220658.1 mRNA downstream 16759 14009083 ~ 14015895 (+) True htr5aa
XM_043256021.1 mRNA downstream 43192 14035516 ~ 14039174 (+) True en2b
XM_043224053.1 mRNA downstream 59429 14051753 ~ 14075443 (+) True rbm33b
XM_043219771.1 mRNA downstream 107026 14099350 ~ 14105505 (+) True dnajb6a
XM_043216903.1 mRNA downstream 125162 14117486 ~ 14136011 (+) True kcnb2a
TU17265 other upstream 1078188 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1078248 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1324946 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1669829 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1670674 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 183040 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 183040 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 783998 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 783998 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2274719 16267043 ~ 16268797 (+) True G12531

Expression Profile