RNA id: XM_043217056.1


Basic Information

Item Value
RNA id XM_043217056.1
length 3654
RNA type mRNA
GC content 0.40
exon number 5
gene id fgf12a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6257551 ~ 6337572 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGTCAGTGTGGAAGAGGCAGCTCTAGTCTCGATCGTACAACGTTCGCTTTAAACGGTTTGGCCAGGACTCGCTGTGTTCTCGCTGTGCTAGACACTTGACGTTTAAAGTCTTTTCgaacaaaataagatatttcgACGTAAAGAGCTATGCTTTGAACTCTACTAGAAGCACTATGAAGAGCTATAAAATAATGTGGACAGCCCAGATGTTCCGTGAAGTTGTGTTCGCGCCACTCACACCCGCCTATAGAGCCTGAGAGCGTGCGTTCTTGTGTCATGGGCTTCATTTATTATGTGGATTCATGCAAAGTTATCTGGAATGAACTAGACATGTGGATCATGTAGCAGTCCCTTGAAAGAGGAATCACGCGTCTGCTGTCTTCGGCACCTGGAATACCTGCGTGACAGGTTACCTATGTTCACATAGGacgttttttaattgttattttttttaatttcgtTATTGTTGCTTTTTCGCTTCTAAGATGGAGAACGGAAAATATGCTTTATGTAATCGTGTGTGAAACTCACAGACGCCTGGTAGATCGCCTGAAAGGGGAATGAGATTTCAGTCCTAATTCACAGGATCCTCTGGATTTTTCGCAAAGAATTGGAATGAAATCTGGCTAATTTTGCGCAGACGATCCagttttgcttatttattgtTACTGGCTATTACGTTGACAGCTGCAACCGTCGAACGGCTTGTTTAACTGAATACTCGAGATGGCCGCGATCGCCAGTTCTCTGATCCGACAAAAACGCCAGGCGCGGGAATCCAACAGCGATCGGGTATCTGCCTCCAAACGCCGCCCCAGTCCCAGCAAAGACCCCGGCTCTCTCTGCGAGCGACATTTCCTGGGGGTCTTCAGTAAAGTCCGCTTCTGCAGCGGCAAGAAAAGACCTGTTCGCCGGCGACCAGAGCCGCAGCTGAAAGGCATTGTGACACGTCTGTTCAGCCAGCAGGGTTTTTACCTGCAGATGCAGCCAGATGGAACCATCGATGGCATCAAGGATGAGAACAGCGACTACACTCTTTTCAATCTCATCCCCGTTGGCTTAAGGGTGGTGGCCATTCAGGGAGTCAAAGCAGGTTTCTACATCGGCATGAATGCAGAGGGATTCCTCTACAGCTCAGAGATGTTCACGCCTGAATGTAAATTCAAGGAGTCCGTTTTTGAAAACTACTACGTTATCTACTCATCCACCATGTACCGCCAACAGGAGTCGGGTAGAGCCTGGTTCCTGGGCCTCACCAAAGAGGGTCAGGTCATGAAAGGCAACCGTGTGAAGAAAACCAAACCCTCTTCACACTTTGTACCAAGACCAATTGAAGTTTGCATGTACAGAGAGCCTTCACTCCATGAGATTGAAGAAAAGCAACGCTCCAGGAAAAGCTCAGGAACCCCAACAATGAATGGAGGCAAAGTGGTCAATCAGGACTCTACATAGCAGGGCTCAAATAAAGGAGGCTACAAAAAGAGTGACCCCTTCCCCTTGCTCTCGCACCTCCAAACACAGGAATAGTACAACACGCTACAATAAGATAACAAACTGAACTCTTGCCTGAGAAAATGTTTAGAAGAACACGGGGGGAGAGAAATATATGTTACCGTTCCAATCAGGAGCTGAACtcacattttatgcaaaaaagttaaatggacagtcatttaatttttaaaaatattaatattatttgggGTTCATGTTGTGaaaaatgagctttaaaacattgtttttttattttcatgtgaaTGCTCTAGCACCTATTTATGCTTTTACTGTCAAATTGGcaatgtttctcttttttgctCAATGTCATTATTTCTGTTTGTGAATATTATGCAGATTTGATCAAGTGTTTTggcttattttattaaattaatttattgtattgtattaccTGAGAGCTAAAGGTAAATGCACTTTGTGAATACGGGAGGGTGAATCTAGAATGTATGCTCAGATATTGTAGAAgttttttggatcatttttggAGCATTTCACTGCTTATTCATTTTGGTATGAGGTAATATCCACCTTAACACTTCAAAATTCTTGCTGCCTTGATGCACATATGTCCAGCACAAgtacactgtatgtgtgtatgctcAACACCTCCAAAGTGCATCTTGGTTTAAGTTTGAGTGGGACACAATGAACAGCTAACTTTTGGATAACAAGTAGATTCCCTGTCAATTATCCACAAATTCCCTTGCACTCAAGCAAAcctaaaaaatctaaaaaaaaacaactcaggATTCCTTAGTCCTGAAAGTGTGATGCTGACGCCAACCCTGTCCAGTCAAAAGCACAAAGAAGGCCAGTTGTTTTGCCCCTGTACAGAGTTTGCAGGAAGTTGGCCTGGACAGAGTGGGTGAATTGTGAAAAAGGTGGAGTCTGACATACACAAGTCTTCCAATAAAAATGGCATGAGAGCTGTGCCCAAGTATGCAGCAATGAGGtgcaacaaaacaaagagaCTTTAAATGCATAAGTCATCAGAAAGTATGTTTGTAGTTAACTGAGGAATGAGgaattaataatatgtataaagaGTGTAAAACAGGCACACAATGCAAAGACTGTCCAGATGAACTGGGTTACCAGAAAAGAAAactctgtaaaaacaaaactctttatttttcatgtttgcaaatgttttcacCTTAAAGAAATCAATCATATATGCATTATGAATAATgagatatttaaatatgcattgataTTATAAACAGGATGAAATTAGGATTAAGAATAAAAGTATGATAATTAAAGCTTTAATCCCTGTGTGAatagcttattttaaaaaagattccATTGagcatttttagtatttacatACAGTAACTGCATTCAGTGCTGGCACGGgcagcatttaaaatgcatttacacagaaatcaaaatggcaaaaatagtaaattattattatagaaaatattttaagcattgGAGTACTAATGACACTCCCCACTGCATTACCACAACATTAACTTCAAAATCTGACTGTCAGCTTCAGGATgtcaaattaatacaaaactAGATAAAACTAACATGGTCTTTCTTGGGTGTCACTGTAGTGGCAAAAATTATTCTTAggtaacattaattaattaataactaaaTTATAGTTCTTtctacaattaaatgaaaattaacattatatacatgcacagaatatgtttatattgttggatataaattaattattaagattaattattattgcCATGAACcacacctctgtggctctcccTCCCCTGAGTACTAACCATTCCTGAGCTGCAATTCCCATCATATCCCACACCTAGGTCTGATTACCTGCCcagatttatttcattataccCCTTATATAAACTGTGCTCAGACACAAACTCAGTgtgaagtcttatccttgccctGGCTGATAATCTGAGCATTTCTCATTACTATTGATTCCCTATGTTTGATCTTGGACTGTTCTCTCTACTTCTGATTGATTGCTGCCCGCCCCTTGACTCTATTGCCTGGACTCCTCGACTCTGATTGTTTTCTGCCTGCCTCAACTCATGTCTGGTATTGTTCACTATTCTTTGTTTATCTCTGATATTGCTGACACTGATGTTGACTTCCTGCCTGTTAGACCATTCTTAATAAAGAGCTGCAAATGGA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14477 lncRNA upstream 143057 6142042 ~ 6142865 (+) True G9697
TU14472 lncRNA upstream 425970 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 453232 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 454807 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 560906 5724701 ~ 5725016 (+) True G9671
TU14570 lncRNA downstream 38571 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 164818 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 174592 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 185233 6522805 ~ 6523467 (+) True G9834
TU14676 lncRNA downstream 186548 6524120 ~ 6524421 (+) True G9836
XM_043255183.1 mRNA upstream 30349 6249048 ~ 6255573 (+) True mb21d2
XM_043219558.1 mRNA upstream 46228 6235870 ~ 6239694 (+) True crfb16
XM_043262112.1 mRNA upstream 447289 5836648 ~ 5838633 (+) True LOC122361161
XM_043223472.1 mRNA upstream 459672 5824155 ~ 5826250 (+) True dusp28
XM_043219129.1 mRNA downstream 29620 6367192 ~ 6367954 (+) False sst2
XM_043218864.1 mRNA downstream 136450 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA downstream 136451 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA downstream 136537 6474109 ~ 6488700 (+) True slc35d1b
XM_043262122.1 mRNA downstream 503054 6840626 ~ 6842093 (+) True LOC122361319
unassigned_transcript_205 other upstream 63403 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 65422 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 172215 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 176275 6109573 ~ 6109647 (+) True trnag-gcc_18
unassigned_transcript_201 other upstream 208458 6077390 ~ 6077464 (+) True trnag-gcc_17
TU14569 other downstream 29605 6367177 ~ 6367954 (+) True sst2
TU14734 other downstream 352800 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 354096 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 648726 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 1168019 7505591 ~ 7582385 (+) False G10108

Expression Profile