RNA id: XM_043217104.1


Basic Information

Item Value
RNA id XM_043217104.1
length 5971
RNA type mRNA
GC content 0.49
exon number 21
gene id arhgap29b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9212459 ~ 9238949 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGtgttatgaataattaaattgtgTCTGCTAACTTcaagaatgaagaaaaactaaaagtgctttcatgtaaaaaaaataatacattccTGCATTATCAATAGTAAGACAATACTGCATATGTAATGCATACTGTTATGTactatgtaaaacaaaatgcgTCGTGAAGTGCATCTAAAAGTTTCATAGCATGATATTGGTTTTGCTAGTGTGAAATAACGGGGTAATTCCTCCTTCTGCGGCTAGTGCACAGGAATGTCCATGTGATACATCAGTGCGGTTTGCAGTCCAGATTGCGGCTGCGAAAGAGGGAGCAGACGATTTCTGTGCTACACGGAACGTGTTTTTTATTGGTTCTCCACATAATTTCCAGCTGTTTACTACATGGTGTTTTCACTTTGGCAGCGTTGATTCAAGTAGCCACTAGAGTATCCTCCTTAGCCACTAGAGGGCCAGTGACCCCTCTGAGCTCCCATGTGTCGCTCAAAGGGTCAGTTTCTTTCAAAGGGAAGTCTTTTAACACAGGAAAATAACTTTGTCTGACACGCTTCTAAAGccttcgctttttttttttttttttgaatggggACGTTGAGAAGAAAGGCCTCAGATACCTGCCTCAAGTTACCTGTAAGACAGACATTCCAGCACGCGCTTGCATTTTAACACTCCACGTCCTCGTCGGCTTTTTCACGATGGAATGTTATGAACTTTAGGAAATCAGATGCACATATTTCCCCCCATTCACGCTCAGACcgtgcagtttaaaaaaaaaaaaatgctgcatagTTTTGCTAAAGAATCTCTCAGGGGCGCAGCAATAAAAGTGTCAAGTGTCTCAAGTTATTGAAATTCTTTCTTCCCCCACCCTTGTCTAGAGTGAGTCAGTGCCATCTGACTCgctgtatttttatcttttcttctGATCTGGAGTAGACTCTGTTATCTCAGGTATTTTATCCTGTCTTGTGATGAATTGCACCTGATAAAGTGATACCCGCATGTGTTGCTTTGACAGGAATCGGTAAGAATCgctattttaatgcattgatgCCGAAAATGCTTTCAAGGGTTTTTTCTGTGAGAGAACTGCTTTCTGAATGCAGCCATTCCTGTATTGGAGCTGCGAAGGGGGCAGAGGTGGAAGCATTGTTGTGGAACTGCAGGATGTCCTGAGGAAGAAGTCAGCGTTCCATTGCAGGGGCCACCGAGCCGCCCGCCTGCATTCAGAAGCAGAGAGGCATGCACCAGGAGCCACGCACCTCTCACGCTCTCGTCTACAGTGCCCTCTCCTTCTGCTCATTTCGTAGCAGTGAACATGAGTGGCAGCTGAGGGTGGGGATTCCCACCTCTGCCGACAGTCGCTGCGTTTTGCGTGACATCCAACTAAAAAATTGCCCATGCGGAACTGGAAACTATAGATGGCCTCGCcgatttttttcttgcatgcgAGGTGGAAAAAGTGGAAGTCAAGCTTCACTGAATCATTGTGAACTAGGCTGTGGCGTTAGTTCCTGAAGTTCTGGGCGAGTTGTTAATCTGTGCTTTACCATTAGCGAACCTGGATATGACTGCAAGTGCAAGCTAAAGGAGTTGGCGTGAACATCAAGGAAgtcaataaagaaaataaagacacaatATTTGGCGAGATACACACATCAATCGATACTTTGGCATTCACCTTTGGCAATGTAGTGTCTGACTTCCTTATGGGAGATGTGGACAGTGGCTCTAGGTTGGGGTACCCCCAAGCCAGAAGAAGTCGCTCTTTTGAAAACCTCTCTGAAGATTCAAGAGGGTGCAATCAAAATGATCTGGCAGATCCGGCTCTGTCCCCAGAGCTGTCCACGGTGGAGCAGGTGGACCTTCTTCTGCTGAAGAATGAAAGTGGAGTAGAGTCGGCTTTGCTCTACGCTAAGGCCTGGTCCAAATACACCAAAGACGTTCTGGCCTGGGTGGAGAAACGCCTCAGCCTGGACATGGAATGTGCCAAAAGCTTTGCCAAGATGGCAGAATCCGCAAAGGCAGTGGCAAGTCAGCAGGACTTCATGCCGTTCCGGGATATTTATGTCTCTGCCTTTAAAAACGAGATTGAGTACAATCAGGTTCTGCTCCAAACAGCTGCAGCTCTACAAACCAACAAATTCACACAGCCACTGCTGTCCCGCAAGAACGACCTGGACAAGCAGAGGAAAGAGATAAAGGAACAATGGCAAAGAGAGCTAAAGAAAATGAACGAGGCTGAGAGCGCTTTGAAGAAGGCTCGGCTGCTGAAGGTGCAGAAGAGGGAGGAGTACGAGAAGGCACGCAGCTCCACCAGCCGCACCGAGGAGGAACAGCCAACAGCAGGAGGCAGGACTCTGGAGAAGAAACGGAGGGTGGAGGAAGAGGCCCTACAGAAGGCCGAGGAAGCGCAGGAGCAATATAAAGCTTGTGTGGCCGATCTAGAGGCGAAGAGGGTCAGCCTGTCAAACGCTAAGAGTGAGATCCTCGCTCAAATTCGGAAGCTGGTCTTCCAGTGTGACCTGACCCTCAAAGCGGTGACCGTTAACTGGTTCCAGATGCAGCAGGTTCAGACACAGCCTCTCTCAGTCAACTACCAAGCTCTTAATGAACAGGCCAAAAAGTATGAGCCAGGCCAGCGCTACTCTGAGTTCGTGTGCAGCCTGCCTAAAGAGCGTGTGTGGCTGGAATCTCTGTCTCAGGACATCACGGCTTCCTCAAAATCGGGAATGTCCCTTCATAAGAGGTCTCAGAGCAGCACTCGCTCATCCCATGGGAACCTGTCACAAGGCTCTGTAACTTCTGCAGATAACCACAGCATAGATGGGGTTGAGGGTACCATACAGCCGTGCAAAGCAAAGATCGCAGAGAGGCGGTCCAATAGCAGTTTAGACATGCAAGCGTTAAGGACGCAGGGCTCCCAGCGGGCCTGGAGCTCAGGCAGTGCCGGTGGAGGAGGGATGTGCAGTGACTCAGAAAGTGCTGGAGGAAGCAGTGAGTCTCGTTCAATGGACTCCCCTACAGCTAGTCCAGGAGATTTCAAACGCAGGCTTCCCAGAACTCCCTCGACTGGTACCATGTCTTCCGCAGATGACCTAGATGAGAGGGAACCACCCTCCCCATTAGATAATGGCCTTGCGGAAATGGTGATGGAAACAGCCAGTTCTCCCGGCCCTTTTCGTAATGCTCAGATGTCGAAAGCTGCACAAACTCACAAGTTGCGGAAACTGCGAGCGCCTTCCAAATGCAGAGAGTGTGACGGGCTGGTGGTGTTTCACGGGGCTGAATGTGAGGAGTGCTCTTTGGCCTGTCATAAGAAATGTCTGGAGACTCTTGCCATTCAGTGTGGTCATAAGAAGCTCCAGGGCAGGCTGCACCTGTTCGGGATTGACTTCGCCCAAGTAGCTAAGAACAGTCCTGACGGCATCCCCTTCATCATCAAAAAATGCACCTCAGAAATCGAGAGTCGTGCCCTGAACATTAAGGGCATTTATCGGGTGAATGGGGCGAAGTCTCGTGTGGAAAAGCTATGCCAGGCCTTTGAGAACGGAAAGGACTTAGTGGAGCTTTCTGACCTCCACCCACATGACATAAGCAACGTGCTCAAGCTTTACCTGAGACAGCTGCCAGAGCCATTGATTCTGTATCGATACTATAACGATATCATTGGGCTGGCGAAAGAGACTCAGAACATGGAGGAGACAGACTCAACCAAAGAGAAATTACCAGGAGAGCAGCTGTGCCTCAGTATTGAGCTTAAAAGAGTCCTCTTCAAAATCAGAGACCTCCTTCGCCAGCTTCCAGCGGCCCACTACAAAACCCTGCAGTTCCTCATCACCCATCTGCACAGAGTGTCAGAGCAAGCTGAGGAGAACAAGATGACCGCTAGTAACCTGGGTATCATCTTCGGTCCCACACTCATCAAGCCCAGGCAGTTGGAGGCGGAGGTGTCGCTGTCCTCTCTGGTCGACTACCCTCACCAGGCCCGAATGGTGGACCTGCTCATCAGACACCACCAGATGATCTTTGATGTCCCGCTGAGCCCTGTGTCTCCCACCAGTCCGACAGCACCACAGCCAGCGCTCAGCCGCCACTCCCGCTCTCTCATGGATATCAAAGAGAGTGCTAAAGTCTACAAGAGGCACTCGTCTGTTATTACCTCTGCACAGCTGATGGAGGACGTGAGGGAAATGAAGCCAGGGGACAATAAAGGGCAAACACCTGCAGGTAAAGGCTCAGGTGTCAATGGGGTTGGCTCAGCTCCTGTAGACGTGCAGAAGTCCACATCTGTGTTCAGCCAGCCCGGTGCCAGCAGCCGAGTGGTGCAACTACGCCCTCAGCGCGCCAAGCTGGCGTCCCGACCCATCAGCATGCCCGTGGAGCGACTGCTCAACGAGCGCAACAGTCGGAACACAGATGAGCGTGAACACTCGTCAGCCGCCATTCAGGAGACCACCGAACCAGACAAGCCCTCGACCCCACGCCACACCAGCTATTACAGAAACCCCTTCATCGACACACAGACGCTGAGGAGGACCTGGGACAGACAGTACAGGCATTATGATGTGACTCCCAGAACTGCTATGATAGTGGCCAACCTGCCTTCCTCTGGCGTGCCAAAACCATCAGAAATTAGCGTTGTACCCCAAAGCAGCAACAGTAGAAAAGACGGTACAAGCCAGTCGGCCGTGGCTCCGATATCCTTCCGAGCGCCACGGACACTGAAACCCCCTCCCGGGACGTTCTATAGACCTCCGTCGGTAAGCCAAATCAGGCCATTTGACTCGCTGCCAAAAACCGTTTCGACAGCAACAACCACTACCACAGGAGCTATATACACGACAGCCATTACTATATTTACAACAGCAGCCACAGCAACGGTTTCCACACTCTCCACAGCCGCCACGACTCCCCCAACCACACCGACGACATCAGTGACTATCGCTCTGTCGGCCAAGCCAACCTTTCCCACGGCGATGACGAGCGCTGTGCCAGGAGCAGAGGAAGGACTCTCAGAGAACGACTCCATCAGCCCGGTCACGCtctctccgcctcagtctccaaGCTCCAGCGCAGAGGAGCTCAGCCCTACGGACGCCAGACCGCTCTATCAGAGACGCAGTCGCCGTATGCAGGAGCTAGAGCACCGAGAGGcccattttgtttaaaaaatgcccCGTCGGACTTGTTTCGCTTGGTACAGTATCTTATATGTGGCGCTCGGATTCCTCCACAGGCCTCACAAGGTTCATTTTAATAGTCTAGTAGATCCGTCTACAGTTTTATACGTGTATGTATTTGTCACTTTTGTgccatactgtatatatgaaaattgttttaatatccCTTTGAGAAAGGGCAAAAATATTAGGAGAGAGGTGAAACATCTCTATGAAATTTTGTCTCTTTAAGCTACTATTTGAGCCAGAAATATCAGCAGAGGTCCAAAACATTTGCGACATTCGCTTATCTATAAGTGAGCACTCTTTTATGTTCTTGTTTCTAAATGTTTATGCCAAATGCGTGTCTCATTATCTCCTTCACAGCGATGAGACACTTCTATATCAGTGAATAATCAgctatattaatgttaataaaagcaGAAGTTCCGtgtaataattgtataaacTCAAAAGGAGTGTGTATAGTACTGTCTGTAAATTCATGCCAACTTGCTCATTTTGATGCACTTGCTAAGccttattttttaacatgcgTTCATCACTGCCTTTGCATGATGTCATGCAGTCACTGCtggctgttttatttgtttaacagtTTGTTTCTTGGAAACACTCCTGCTTGTGTTTTAAGCTGCGTAAGTgcatctgtttctgttttatttcagagttatatatgcatttgtttacatttttacacataaCCTGCTGCCATAAACATACATCTATACCAACAGTTCTTGAAGACATGCAACATATTTgcagattaaatatttagttaaaaacta

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K20644 ARHGAP29_45; Rho GTPase-activating protein 29/45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15546 lncRNA downstream 268866 8943099 ~ 8943593 (-) True G10438
TU15540 lncRNA downstream 282376 8929490 ~ 8930083 (-) True G10432
TU15494 lncRNA downstream 413473 8798582 ~ 8798986 (-) True G10400
TU15482 lncRNA downstream 457314 8754849 ~ 8755145 (-) True G10389
TU15417 lncRNA downstream 581853 8630406 ~ 8630606 (-) True G10345
TU15662 lncRNA upstream 101212 9327802 ~ 9331243 (-) True G10518
TU15716 lncRNA upstream 223970 9450560 ~ 9450926 (-) True G10569
TU15709 lncRNA upstream 230573 9457163 ~ 9461084 (-) True G10562
TU15788 lncRNA upstream 379048 9605638 ~ 9606195 (-) True G10621
TU15790 lncRNA upstream 385305 9611895 ~ 9612883 (-) False si:ch211-267e7.3
XM_043217590.1 mRNA downstream 2418 9182056 ~ 9210041 (-) True abca4b
XM_043254118.1 mRNA downstream 153357 9055723 ~ 9059102 (-) True amy2a
XM_043255533.1 mRNA downstream 211198 8944408 ~ 9001261 (-) False LOC122356610
XM_043255523.1 mRNA downstream 211638 8944408 ~ 9000821 (-) True LOC122356610
XM_043216792.1 mRNA downstream 322519 8886668 ~ 8889940 (-) True selenoj
XM_043221234.1 mRNA upstream 22010 9248600 ~ 9250969 (-) True f3b
XM_043223736.1 mRNA upstream 36604 9263194 ~ 9271097 (-) True cnn3b
XM_043260818.1 mRNA upstream 119439 9346029 ~ 9446782 (-) True dpydb
XM_043255868.1 mRNA upstream 264973 9491563 ~ 9519781 (-) False plppr5a
XM_043255872.1 mRNA upstream 271956 9498546 ~ 9519770 (-) True plppr5a
TU15605 other downstream 24350 9187488 ~ 9188109 (-) False abca4b
XR_006253094.1 other downstream 784556 8403327 ~ 8427903 (-) False zfyve9a
TU15203 other downstream 1104671 8106856 ~ 8107788 (-) True G10213
TU15175 other downstream 1140625 8070776 ~ 8071834 (-) True G10196
TU15155 other downstream 1427305 7784468 ~ 7785154 (-) True G10178
TU15736 other upstream 273549 9500139 ~ 9519522 (-) False plppr5a
XR_006253077.1 other upstream 895177 10121767 ~ 10139585 (-) False pkn2a
TU16135 other upstream 915453 10142043 ~ 10143668 (-) False lmo4
TU16347 other upstream 1149473 10376063 ~ 10378211 (-) True G11011
unassigned_transcript_206 other upstream 1162961 10389551 ~ 10389623 (-) True trnak-cuu_1

Expression Profile