RNA id: XM_043217246.1


Basic Information

Item Value
RNA id XM_043217246.1
length 1759
RNA type mRNA
GC content 0.51
exon number 8
gene id zgc:136930
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15230006 ~ 15235251 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGAAGACCCATCCTAGTAGGTAAATGTGCCTGCAGGTCAGAATATTTTGAGATTTAACAGACAACCGACGCCAATGCCTCTCCAACAAGACAAGTTACAGCTTATTCTGTCTTTGTGAAGTGTCTCATTTTGCACTGCCCTCCCTCCTTTAAGAGTATTTAAATGGCGAACATTAATCTCTCGCCCTGCCTGCACTCTCTACTCGGTTCAGACTCTGATCCTTCAGTGCTCATCCCTAGCTGTTCACCATGGCTTTGTCAATTTCCTTGGCCTCTTCCAGGATGTCTGGAGGTTATGGAGGGTTTGGTGCAAGTGGTGGAGGAAGACTGAGTTTGGGGCTCGGGGGTGGCGCTGGCTTAGGTCTTGGGCTAGGAGGTGGACTGGGCCTTGGAGCTGGTGGAGGTCTCGGCCTTGGGCTTGGTGGAGGTGCAGGAGCAGGTGCAGGATTGGCACTGGGTGGAGGTGGAGGCGGTGCACTGGTTGCCAGTCCTGCATTTGCAATGGGTCGTGCCGTTGCTGCAAGAGGACTCGGTGGAAGCGCCGCGCTCGCTGCCGGACCTGCATCAGGTGTCGCTGTGGCCCCGATACTTTCCAGGGCAGCTGAGAAGCACACGCTCTCTGGGCTGAATGACCGCTTCTCCACATACATGACCAAAGTACGGGCGCTACAGCAGGAGAATGCAGCTCTGGAGGCCAAGCTGTCCCAGCTGACCGGGGGGACGGATGTGTCCCAAGAGTCATCTGTGACTGCCACGGTGGAGTATGAGGCCCAGCTGAGCGAATATCGCAGCACACTGGAAACTCTCACCATCGACACTGTCAGACTGGAGATTGAGCTGGACAATGTTCGTGGAACTGCCCATGAACTGAAGGCTAAGCTTGACTTTGAACAAGGAGTGAAGTTTCAACTTGAGTCTGACATTGCTGCCATGAAAAAGGACATAGAATTGGCCTCTGACCTAAGAATTGATTTGGATGCCAAATATTCCAGCCTGAAAAATGAACTGGACTTTGTCAGCAAAACACAAGAGGAGGAACTGTCATCTTTGCAATCTAAACTGGGCACAACAACAATGGACACTTCAGTCTCAATGATTGAAGTAGACACTGGGAAGTCCTTTGACATCTCTACCGCTCTCAACAAGATGCGAATGGAATATGAGAAATCTGTACAGCAACACAGAGAGGAGGCTGAGGCGTATTACAAACTCAAGATGGATGAGATTCAGACAGCCAATGCCAAAAACACAGAGGCCGTGTCATCGACTAAAGTTGAGATCACAACAGCCAGGAAAGAGCTGCAGACACTGAATTTAGAGCTTCAAGGGCTTGTGGCTGCAAACATGACTCTGGAGCAGAGTTTAGCAGAGGCCCAGGCCCAGTCCAGCGTGGGTGTTGCTGAATACCAGGCACAGATCGCTAGCCTCACATCCGCCATTGAGGTGGCTAAAGCAGATCTCCACAAACAGATCCTGGCCTACCAAGAGCTGCTGGACATCAAACTCGCCCTGGACGTTGAGATCTCCACCTACAGAAAATTGCTGGAAGGAGATGACTTCAAGGTGCCTGAGTTTACGGAGTCATCCTACACTTTTTCAGGGAGGGCCCTGCCCCACACCAGCACCCCCCAGGACTCCCCCCATAACCCTGCCCCAAAGGACATACAAACTAGATACATCCTGACAGGCAAGTTTCACGAAGGCAGTGTAGGACAGAAACTGCTtcaggtttattattattagtgctcatcccttgtc

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18164 lncRNA upstream 49752 15118457 ~ 15180254 (+) False G12255
TU18267 lncRNA downstream 10457 15245312 ~ 15249249 (+) True LOC122357435
TU18270 lncRNA downstream 17639 15252494 ~ 15253044 (+) True G12321
XR_006252526.1 lncRNA downstream 263669 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 441348 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 488231 15723086 ~ 15804921 (+) True G12432
XM_043222099.1 mRNA upstream 7327 15214869 ~ 15222679 (+) True klhl18
XM_043220464.1 mRNA upstream 292048 14935722 ~ 14937958 (+) True mycb
XM_043217848.1 mRNA upstream 297326 14918221 ~ 14932680 (+) False ankhb
XM_043217840.1 mRNA upstream 297326 14918409 ~ 14932680 (+) True ankhb
XM_043217883.1 mRNA upstream 314697 14910919 ~ 14915309 (+) False otulinb
XM_043217271.1 mRNA downstream 3626 15238481 ~ 15240694 (+) True ccr9a
XM_043256825.1 mRNA downstream 6942 15241797 ~ 15246316 (+) False LOC122357435
XM_043256794.1 mRNA downstream 21189 15256044 ~ 15260435 (+) True si:dkey-154p10.3
XM_043256801.1 mRNA downstream 22166 15257021 ~ 15260435 (+) False si:dkey-154p10.3
XM_043256838.1 mRNA downstream 25720 15260575 ~ 15262914 (+) True LOC122357442
XR_006252462.1 other upstream 447029 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 447302 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1050391 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1050391 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2356861 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1032188 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1797464 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2127390 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2331986 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2372397 17607252 ~ 17608092 (+) True G13111

Expression Profile