RNA id: XM_043217271.1


Basic Information

Item Value
RNA id XM_043217271.1
length 1877
RNA type mRNA
GC content 0.43
exon number 3
gene id ccr9a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15238481 ~ 15240694 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGTTAAACCTCAAGACCTTAAAAGCTTCTGCAAAACAGACGTTTTCCAGACGGCGCCAAAAACAACGTGAAAGTGAAGACAGCAGACAGCAGCTCATCTGTATCACTAGTCTTAATTTTTCTCAAAGAACGTGGAgagaaaaatgaACATAACAGAGTCTGCGATCCCGTTCACTGAGGTGACTTCAGAATATGATTATGAAGGTTCCACAACTATGGGTGATTATGAAGGAGGGGAAATATGTAACAAAGCAGCAGTGAGAGAGTTTCGAAGCTACTATGAGCCTGCTCTCTACTGGATAATTGTGATTTTGGGAGCCATTGGCAACACTCTGGTGGTCTGGatatacacacacttcaaaAACCGCCTGAAGGCGATGACGGACGTCTATCTACTGAACCTGGCTATTGCTGATTTGTTCTTTCTCTGCACTCTGCCCTTCTGGGCCGCCGACTCCATCAGCGGATGGACCTTTGGCTCTCCCCTCTGCAGAATCGTCTCTGCCATTTACAAAATCAACTTCTTCAGCAGCATGTTTCTACTTACCTGCATCAGCGTCGACCGCTACATAGTGATTGTCCAGACTACCAAAGCGCAGAACTCCAAGAGGGATCGTCTCCTGTACAGCAAACTCATCTGTGTGTTAGTCTGGCTCTTCGCGGCTGTGATGTCCATCCCAGAGTTTCTCTTTGCTCGATCAAAAGAGGATGATGAAGGCAATCACTTTTGTACGATGGTCTACTGGAACAATGAAAACAATCGCACCAAAATAGCGGTCCTGTCTCTCCAGATCTGCATGGGCTTCTGCATCCCTCTCATAGTGATGTTCTTCTGCTATACCAACATCATCCGCACCTTGCTGAAGACAAGGAGCTTCGAGAAGCACAAGGCCCTGCGGGTCATCCTGGCAGTTGTGgccgtgtttgttttctctcagcTTCCGTACAACAGCATGTTGGTCTTTGAAGCCACTCAGGCGGCCAATACGACTGTCACAAACTGCCAAGAGGTCCAACGCTTTGACATCGCCAACCAAGTTATGAAGAGTCTCGCTTACATGCACAGCTGCCTAAATCCATTCCTTTATGCCTTCGTCGGAGTGCGTTTCCGAAAAGATGTCATTCGACTTTTTCAACACCTTGGCTGTCTTCCAACCCTCAAGAACTCCAAGTTACTGCAGGGAAGCTCTCACCGCCCCTCTGTTATGTCAGACACAGAAACCACCAATGCTCTTTCATTATGATTGGTGTCAGAACACTGTCAGTGAAGCTAGCTTAGCAAAGGCTTCTGTTTTGCTGCAGGTGCTCAGGTGcccagtttcaaagcagaagtTTGAGGTTCCTTAGAAGGACTTTGTATGATTGAAAACATGCTGTCTGGAGGAGGGTGAAGTTACCCGCTCACCACAGTGAGATGGCTGCTGCTGTGAATATTTCACAACAAGAGTTCTCTTTGTTTGCCTGGGCCATTTATATGAGCGGCAAAAATTCTGATCAAACAAACATAAGAACAGTGTTGTGGCAGGGAGAGTGAATGGTTACTGTTTTGGCCATTTCATTGCAACAATATTTTCCATCTCTTGTTTAGCATTAATATTTTCAGTCCATATAAATGTTGTATAATAACATGATTTGTCATGTACGCGCAACAAATTTCttctgaaagtgtttttattcccaatgatttatgaatgtttcaaattgttactgttttttttcttttagttgcTGTGAAAATATAGCTGTGgatattttattcatgatttGAAGCCAGTTGTGTACTTTCAGggtatttgtgttgtttttgattcacgccaaaaaaattatgtatatatgtatttgctgctcattttgtaaaacttaaaactatatatta

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG:

id description
K04184 CCR9, CDw199; C-C chemokine receptor type 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18164 lncRNA upstream 58227 15118457 ~ 15180254 (+) False G12255
TU18267 lncRNA downstream 4618 15245312 ~ 15249249 (+) True LOC122357435
TU18270 lncRNA downstream 11800 15252494 ~ 15253044 (+) True G12321
XR_006252526.1 lncRNA downstream 257830 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 435509 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 482392 15723086 ~ 15804921 (+) True G12432
XM_043217249.1 mRNA upstream 3230 15230016 ~ 15235251 (+) True zgc:136930
XM_043217246.1 mRNA upstream 3626 15230006 ~ 15234855 (+) False zgc:136930
XM_043222099.1 mRNA upstream 15802 15214869 ~ 15222679 (+) True klhl18
XM_043220464.1 mRNA upstream 300523 14935722 ~ 14937958 (+) True mycb
XM_043217848.1 mRNA upstream 305801 14918221 ~ 14932680 (+) False ankhb
XM_043256825.1 mRNA downstream 1103 15241797 ~ 15246316 (+) False LOC122357435
XM_043256794.1 mRNA downstream 15350 15256044 ~ 15260435 (+) True si:dkey-154p10.3
XM_043256801.1 mRNA downstream 16327 15257021 ~ 15260435 (+) False si:dkey-154p10.3
XM_043256838.1 mRNA downstream 19881 15260575 ~ 15262914 (+) True LOC122357442
XM_043256812.1 mRNA downstream 21267 15261961 ~ 15266205 (+) True opn4.1
XR_006252462.1 other upstream 455504 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 455777 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1058866 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1058866 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2365336 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1026349 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1791625 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2121551 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2326147 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2366558 17607252 ~ 17608092 (+) True G13111

Expression Profile