RNA id: XM_043217338.1


Basic Information

Item Value
RNA id XM_043217338.1
length 5576
RNA type mRNA
GC content 0.49
exon number 31
gene id yeats2
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21504200 ~ 21532284 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCGCTCTTTCCTAAACGGGAACGCGCCCAGCACGAGTTCGTGTGTCCGCGCGAGACTTTCGTGTGCGCGAGACCTACCGAAGCTAACGGCTAAACGCCTCACCGTTAAACACCTCACCAGCCAATTCAGCTCCAGCCAATGAGTGATCATGTCTGGGGTGAAAAGGAAAATAGAGGACAAAGATCCTGACTATGAGGACATCACGCAAGTGCAGGAGAACAAGAGGAGCAAAGTGGTGGAGCAGAACGCCCGTGAAGCTGCAGTGCAGAAGATTGAAGCGATCATTAAGGATCAGTTTTCTCTTGAGATGAAGAATAAAGAGCATGAGATTGAGGTTATCGGGCAgaggTTGAATGAGGCCAGGAGAATGATGGACAAGCTCAGAGCATGCATTGTCGCGAACTACTATGCCAATGCTGGCCAGCCAAAAGTTCCTGAGGCCTCTAAAAGTGATCCATCTGTGCTGAACCACCCTGCCATAAAACGCTTTTTGGATTCCCCCTCCCGCTCCTCATCTCCACTGAACCAGAATTCAGAGACACCGTCGCAGGTCCAGTCCGAGACAGAGTCCCTCAGCCAGCACGGGGAGGCAGGGGAGAGGGAGACGGACAGTGGGAGAGAGGACGGTGCTCCACGTGAACGACGCCCCGGCAGAAACACAGGAAAAGACACTTTTGGTGTGCCATCATCTTTAGAGCAGCATGTCACTTACCACACTACTGGAGATGAAGCTTCTCGCCTCTACATGAAGAAAACCATTGTTGTGGGCAACGTATCCAAgtaTATTGCCCCTGATAAACGTGAGGAGAACGATCAGTCCACTCATAAATGGATGGTGTATGTTCGAGGTTCTCGCAAAGAGCCTAGTATCGATCATTTTGTAAAGAAAGTCTGGTTCTTCCTGCACCCCAGCTACAAGCCCAATGACCTTGTGGaagtcagtgagCCACCATTCCACCTGACCCGTCGAGGGTGGGGAGAGTTTCCTGTCCGTGTGCAGATTCACTTTAAAGACCAACGGAATAAACGTATCGACATCATCCACCACTTAAAGCTTGACAGAACATACACAGGTTTACAGACTTTGGGAGCTGAAACGGTGGTGGATGTTGAGCTCCACAGAAACTCACTAGGGGATGACTTCATCCCCTCTGCCccctcatcttcatcatcatcatcatcttcctctCATCTGCCATTTGGGGGCGGGTCTGGTTCCTCCTCCACAGCTGCCCAAGGCTCTCGGCGGCCCTCCTCTCCCTCTCAGCACACTCATGATGACTCGGATAGAGTTCCAGGTGTGACTGTCAAGAGTGAGTCAGTGCGTTCTTCATGTTTTGAACGAACTTCGCAGTCAAACAGATCTGAGAAAATCACCCTTGGTTCCCACGGAAACTCAGCCTTTCAGCCAATCACGGCCAGCTGTAAAATAATTCCACAAGGGCAAGTGCCCAGTCCCGCCGAATCACCTGGGAAATCTTTCCAGCCGATTACAATGAGCTGCAAGATTGTGTCTGGTTCTCCTATCTCCACCCCTAGTCACTCTCCTCTCCCCCGGGCATCATCATCCACTCCAGTACACATGAAGTCCAGCCCCTCAGTCATAAATAACCCCTACATTATTGTGGACAAACCAGGGCAAGTAATTAATATGGCTGCATCGACATCTGCAGCTACAGGCAGTCCAACGGCCAAGCAGAGCAGCACAGCCCATGGTGCTCGATCACCTGCTCCTAAAGTTCACACCAGCAGCTTCCTGTCCTCTGGAGTCAAGGTTATAATCAAGCAAGAACCAGGAGAGGTACCCACCCAGCCGTCACCACAGCAACATGTTGTCTCCACCGCAGCATCCCAGCAGCAACAGTATGTGACAGTGAAGGGAGGTCACATGATAGCCATGTCACCACAAAAACAGAGTGGGGCTGGGACTGGAGGTGCCACACCCAGCAAGgttTTGGGGATTCCACTGGGCTCTGCTGTCAAACAGGTCTCCATGAGCAGCGGGCAGATCTTGGTCGCTAAGTCAAGCCCCTCTGTTTCAAAGGTGGTGGGCCAAAAGCAAGTGGTTGCACAGGGCGTCGCTAAAGCAATCGTCAGTGGAGGAAGCAGTGGTGCAAGTGGCATCACAGGACAGCAGGTGCATGCTGTTACCAAGTCAGCAAGTGGGTCTGGAGGAAGTGGCAAGAGTGGAGttatgGCCACCTTACAACTACCAGCAAATAACCTGGCAAACCTGGCTAATCTGCCTCCGGGCACCAAACTTTACCTTACCACCAACAGCAAGAACCCATCGGGCAAAGGCAAACTACTACTGATCCCGCAGGGAGCCATTCTTAGAGCCTCACACAGCGCAGGCCAGCAGTCTCAGAGCTCTGGTTCTGGAGCATCACATTCCTCCAGTGGGTCCTCAGGGTCTGGCAGCTTGCATTCCAATTTATCCTATACTTCTTACATCCTCAAGCAGACTCCTCAGGGCACATTCTTGGTTGGTCAGCCAGGGGGCTCTGGGAAACAGAGCTCTGGTGGGCATGTGGCATCCAGTCCTGCATCCAGTACCCAGCAAGCTATTCGGGTCACAGCCGGACAGAAGGCAGCCATATTGGCTCAGGTGGTGGGTGGGTCTCAAGGTTCTCAGGTGAAGCTGTCAGATGGCTCAGTGAAGATGGTAACAGCTGCCGCAGCAAGTCACCTGACTAAACCTGGCACAACAACTCTTAGAATGACAGGAGGTGTCATCACTGCCACAAGCTCTGCCCCATCCACACCCAGTGCCACACCCACCTCTCAACAGTCAGCAGAAGCCACTGGAGGATCGTCCTCTCAGCCGTTCCCTCAGACTGCTAAAGCACCACCGCAGCACCCAGTGCTTGTAGCTGCCAATCAAGCTGCGGTGATCAGTGCAGCTAAGAGTGCCAGCTCTGCTGCCAGCACAGCAAAGAGTTCTACTTCTAGCACCGGTGCTGTTGTCACTGTCGCAAAAAGCGTCAACATGCCTCTCATTAGCCTGTCGAAGGGCACGGGGTCGTCTGTTGTGGGAGGAGCCAAAAGCTCCAGCCCATCACTGGTCACTGCAGCATCACTGATAGGTGGAGGAACGGTCAGCGGGAAAACTGCTGCCACCATCTCAGGTATGTTGAAATTGCATCCAGCTCAGTCCAGTTCCCAGCAGACAGTTCTCACCATCCCAGCTAATCAGCTAAAGCAACTCAGCGTGGGCAGTGGTTCCTCAGGGCTGCAGACCATCTTGATGCCTGTCGGCAAAGTCATGCAATCTGGTACTAAAGGTGCATCTAGCAGCAACACAAACACGAGTGGAGCTGCTTCCTCTGCATCCACACCTGTAGCTCAAGTTAAAACTGAACCAGGTTTGGTTGGCTCCAGTTGTACAACTCCAGTACCCCCAACATCTGCCCCAGCCTCTACAGCAAACACCTCTGGTCCCCTGCCGACAACTCCCACATCCACAGACCCAGCTGCAACTATTAAAGTAGAACAAGGCATAGAATCTACAGCTCATGAACTTATCAATACGGAGCACATAGAGAACATGACACAACTTCTGACAGCTATCGTGAAGAAATTCCCTCTGATTGTCCCAGAGAAAAATGAGGACTCTCATCCATTTTGTGCCACCTCTGTGGATCAGTACTACTCCTGGAACATTGGCAAACGCAGAGCTGCAGAGTTGCAGCGAGCAGTGGCTGTGCGCCGTGTGTGTGCTGATCTGTTAGAGAGGACCCCTCGGCTTCAGGCCCTCACTCCACCCAGAACTAAAGAGGTGCTCTGCTGGTGCCGTCTCCGTGGTTATACGCCCCCTGACCCTGAACCTCAGCGCACAGAGGAGGACTCCATTGAGGACATACTCACACAGATTGACAGTGAACCCGAGTGCAGTTCGACTCTGACAGGCTGTGAGGAGTTGTCACAACGACTGGAGCAACTTCAGAGGATTCTGAAGGCGGAGCCtgatgaggaggatgatgagCTTCTTGACATCATCAGTGTGAAAGACATAGACGCTGCCAAAGTCAAAATTAAACTTGAACAGGAAGAGGCTGAACAGGAACCCAAGTTTTTCTTGGGGCGCTGCCCATCAACCCAGCTCATTAGAGACACGGCGGAGCAGaTCGGCGTCACACTGCAGCAGGTGGAGGTGGAGAAAAACGTTTTTGCTCCAGTTGTGGAGACCATGATTCTTAAGGCTGTGGAGCAGTTTGCCAGTGAAATTCTCAGGGAGTCTTTGGCCAATGCCCATGGGAAATCCCAACAAAACAGAACTCCGAGAGAGATATCGGCTATGGACGTGCATCAGGCCATTAGCTCTATTCCCACCTGTGATTTTCTGACTAATAGGTACATGGGAATCATGGTGAAGGACGAAGGCCATGCTGACTAACTTCACCCCTTGGCATCTGACTAGAGACAGACTCCTCCTCCTCACATTCTGTAATGGCAGAGAATGTGCAAGGCTGACCAATCACAGGTGCAAACGGCCTTTTACTTGTCGGTGTCATAATTGATGTCAGCCATTATTCCCATAACAGCTGCGAGAGCACTGAACCCAAACAGAGCTTGATACAGCGTTTGTTTGCAAATGGCTacatcactttatttattagtttttcatACTTCATTTATGAATTCAGTGATATTTATGGTCCAGTATATGTATTAGTACAGTACAGTGTTAATGAGCAGGTACAGTACTGATTCTGTTGTTCTACTTTTTTATTGGGACACTAAATCTACTAATTTAAGCCCGGATAACATTTAACATGCTCTGCCATTGAGACAGAGTCTTATGTTAGTCTTAAAAcaacagttcatccaaaatatttcaCTCACTCAACGGTGGTggctaaatgatgacagaatttcaaataattttcaaataaatttcaaAGTGCAGGCATTAAATGGGCCACTGAACAATTACCTGtactgtttttctgttctgaaaTGTGATTATCAAGCAGGATTTATTTGGAGAAGCTGATTTAGTTTTATATGAAATCATCCAGTCATTGTGTTTTTAAGGGGTCTTAAATGAGATAAAATGTCCATTTTGAGTCACACGTCTTCACTGGGGCAAAGAATGTCTAAGAAAAGTCTTAATCATGTTGTTTTCATATGAATGTGAGTCGTTTTCGTACAGCTGTGGGATTTATGAAGGATTGAACAGCAGTGAGAGTgtaagttttcttttttgtactttttctgTCATTTGGGGGCATTGAGGACAACATGCAGATAGACAGGAGGCATTTGTGTATTTgctaaaacaagcaaaaatcttaaaggaaaaaaaaacaactaagtATTGTGTCCTCTGGTTTGGTGGGCTACTTGTGTCATACGTTGAGCATCGGTTTCTGTATCCTTGTGTTTATACACATCAAGAAACAATttctggtgtgtttgtgtggatggGAGagaatgtgtttctgtgtgttaaTTCAGTGTTAGTCTTCACTTGTCTAACTGAACTCCTGAATGTTTTTCCTTCACATTGTGTATCAAAAAATAGCTATTCTTGTATTAAAAACGGTCGATCTGCCACTGAGACGAATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21010 lncRNA upstream 133701 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 158099 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 335313 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 350418 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 353064 21150658 ~ 21151136 (+) True G13994
TU21083 lncRNA downstream 961 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 24560 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 184487 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 187634 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 278645 21810929 ~ 21812903 (+) True LOC122359002
XM_043217763.1 mRNA upstream 2590 21483779 ~ 21501610 (+) True klhl24a
XM_043252934.1 mRNA upstream 21558 21481134 ~ 21482642 (+) True LOC122354659
XM_043252907.1 mRNA upstream 23334 21477659 ~ 21480866 (+) True LOC122354646
XM_043252921.1 mRNA upstream 26676 21474611 ~ 21477524 (+) True mterf4
XM_043219257.1 mRNA upstream 29636 21462799 ~ 21474564 (+) False pask
XM_043217409.1 mRNA downstream 25861 21558145 ~ 21619872 (+) True ece2a
XM_043217417.1 mRNA downstream 26058 21558342 ~ 21619872 (+) False ece2a
XM_043262118.1 mRNA downstream 99746 21632030 ~ 21637918 (+) True alg3
XM_043262117.1 mRNA downstream 120456 21652740 ~ 21673600 (+) True prss56
XM_043223826.1 mRNA downstream 144160 21676444 ~ 21681888 (+) True chrng
TU21079 other upstream 21882 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 142492 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 142492 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 142492 21337682 ~ 21361708 (+) False G14211
TU20650 other upstream 339378 21164297 ~ 21164822 (+) False G13998
TU21151 other downstream 183071 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 328607 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 396463 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1158967 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 2012822 23545106 ~ 23547974 (+) True G14831

Expression Profile