RNA id: XM_043217539.1


Basic Information

Item Value
RNA id XM_043217539.1
length 3106
RNA type mRNA
GC content 0.46
exon number 12
gene id klhl20
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15849084 ~ 15856755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AggaaactaatataaaaaattaaaaataaaagttgacgGTGTCCCGTAAACCCAGCGGTTGTCTTGATATTATCTGGCTAAATCTCGACGACTTAAAATTCAATCTGGACCGATTTAATGGACAAATAAGGGGTACCAGTGCACGCCCGGATACCACAGGAATGGATATCACAAGTCGCTGCACCCTTGGTGACCCCAACAAGCTCCCAGAGGGAGTTCCTCAGCCTGCCAGGATGCCCTACATCTCAGACAAGCACCCTCGGCAGACCCTGGAGGTCATCAACCTGCTCCGCAAGCACCGAGAGCTGTGCGACGTGGTTTTGGTGGTGGGAGCCAAGAAGATTTATGCACACCGTGTGATCTTGTCCGCCTGCAGCCCCTATTTCAGAGCCATGTTCACGGGGGAACTGGCAGAGAGCCGACAGACAGAAGTTGTGATCCGTGATATTGATGAACGAGCCATGGAGCTGCTCATCGACTTCGCTTATACCTCGCAGGTGACTGTGGAGGAGGGAAATGTGCAGACTCTGCTGCCTGCTGCCTGCTTGTTGCAACTGGCCGAGATTCAGGAAGCTTGCTGTGAATTCCTGAAGCGGCAATTGGACCCCTCGAACTGCTTAGGCATCAGGGCCTTCGCCGACACTCACTCCTGCAGAGAGCTGCTGCGTATCGCTGATAAGTTCACCCAGCATAACTTTCAGGAGGTGATGGAGAGTGAAGAGTTCATGCTGCTGCCAGCCAACCAGCTGATAGACATCATCTCCAGTGATGAGCTCAATGTTCGAAGTGAGGAACAGGTGTTTAACGCTGTAATGGCCTGGGTTAAATACAGCATCCAGGAGCGCAGGCCTCAGCTGCCGCAGGTTCTGCAACATGTGCGTCTTCCCCTTTTGAGCCCCAAGTTTCTGGTTGGGACGGTGGGTTCAGATCCTCTGATCAAGAGCGATGAGGAGTGTAGAGACTTGGTTGATGAAGCCAAAAACTACCTCCTGCTACCCCAAGAGCGCCCCCTGATGCAAGGACCTCGAACCCGGCCCAGAAAGCCAATCCGATGTGGAGAAGTACTGTTTGCTGTGGGAGGTTGGTGCAGTGGTGACGCTATCTCAAGCGTTGAGCGCTACGACCCTCAGACCAATGAGTGGAGGATGGTGGCGTCCATGAGCAAACGCCGCTGTGGAGTTGGTGTCAGTGTTCTGGATGATCTGTTGTATGCGGTCGGCGGACACGACGGCTCGTCTTATCTCAACAGTGTGGAGAGGTATGATCCTAAGACTAACCAGTGGAGCAGTGACGTCGCCCCTACGAGCACCTGCAGGACCAGTGTGGGTGTTGCTGTATTAGGAGGGTATCTGTATGCTGTGGGAGGTCAGGATGGTGTTTCCTGTCTCAACATTGTAGAAAGGTATGATCCGAAAGAGAATAAGTGGACCCGTGTTGCCTCGATGAGTACCAGGAGGTTGGGTGTAGCTGTAGCTGTATTAGGAGGTTTTCTTTACGCAGTAGGAGGTTCAGATGGAACATCCCCACTAAACACAGTGGAGCGGTATAACCCTCAAGAGAACCGCTGGCACACAGTGGCACCCATGGGTACCCGTCGGAAACACCTGGGCTGTGCAGTATACCAGGATATGATCTACTCTGTGGGCGGCAGAGACGACACCACGGAACTGAGCAGCGCAGAGCGGTACAATCCCAGAACCAATCAGTGGTCACCTGTAGTTGCGATGACGTCCAGAAGAAGCGGGGTGGGTTTAGCAGTAGTAAACGGCCAGTTGATGGCAGTTGGAGGATTTGACGGTACCACATACTTAAAAACTATAGAAGTCTATGATCCTGATGCCAACACATGGAGGCTCTATGGAGGAATGAACTACAGGAGGTTGGGAGGTGGCGTCggtgtaataaaaatgactcaCTGTGAATCACATATATGGTAACACCTACAGTATCCATCTCTCAGATGCCTCACCATAGCTCGTGCCTCATAGAGACATTGTACATCATgcaagaggaaaaaacaaaacaaaactgagtaTTGTCTCCAGTTACTGAGATGGCAAACGTACCATCTCCTGAAGCTGCTCTGAGGAGACTCACCTGGCCATAGAGCATCACTCCATTTCGTTTTTACATTTGGTCGTACTTGAGAATAGCCAAAGGCAATGTTTTGAAGAGAGAAGCAGCAGCCGGAAAAAGCATCAAGCCAGAGCGTATGTTTTTCTGGAAGGAACCAGCCTTCCGCCGGTCTATTTGACTGCATTGAAGAATAACTACAGTAACCTGAAACGCACGTCGCTAGGGATTGGTGTGAATGACGCTCGTTCTTGGAAGCAGATGTTTCCCTGAATAATGTTCTAGTCTGAATTGGATGCACTGTGATATCTTTACTATTTCtttaagtttaggttttaaTGAGTTCTACACTGAGCATTAACTGTTCCTCTGCATTTTACCAGATGTAAGAAGATTtgttctctcttctttctgtttctttggTGTGCTGAAAATGCAGTCCCTCCTGAAACATTGCAATCTAATGAAGGctgtaaaagaagaaaaataagttatttttgaAGCAGTCAAAAACAGGTTTGATGTATTATcaatttgtttacttttatacAACCGAATGCATCATTGAACCAGTCCATGCACTTTAATCCACTAAGAGTTTTTctattaaagtttgttttttttttttttttttttaaagattgttgGATGTATTGTTTTATGCAAGTATAAGGAcccaaggtaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaagatttcataaTCTGACATTTTTAGAACAAACAGGTTTGCAGTAGTAGCCTGCACGTATGCTCAAAAAACTTAATGTATAGCTTGTTACTGAATATGAGATGAATCTCTTTGAATTGTTACAActgcccttttttttcttttttaaatcaacacttGTTTTCCCACAGGACAGTTATGTGTTCTAATCTTGGTGTTGAAATACGGTTACATAAAGTATATCTTCCATgatcttatttaattttaaagatgTACAACTGTCTATACATTTCAGATCTTTGAAAGTGGAAATAAAATATCCAAagcaaaataa

Function

GO: NA

KEGG:

id description
K10457 KLHL20, KLEIP; kelch-like protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18436 lncRNA upstream 37691 15810893 ~ 15811393 (+) True G12451
TU18414 lncRNA upstream 44163 15723086 ~ 15804921 (+) True G12432
XR_006252280.1 lncRNA upstream 106286 15731830 ~ 15742798 (+) True LOC122356092
TU18415 lncRNA upstream 107483 15731819 ~ 15741601 (+) False LOC122356092
TU18398 lncRNA upstream 170638 15676203 ~ 15678446 (+) True G12419
TU18465 lncRNA downstream 18429 15875184 ~ 15875750 (+) False dars2
TU18466 lncRNA downstream 18429 15875184 ~ 15875708 (+) False dars2
TU18481 lncRNA downstream 21379 15878134 ~ 15878404 (+) True G12491
XR_006252739.1 lncRNA downstream 176002 16032757 ~ 16034626 (+) False LOC122359940
TU18505 lncRNA downstream 176017 16032772 ~ 16034908 (+) True LOC122359940
XM_043254489.1 mRNA upstream 87330 15754575 ~ 15761754 (+) True kif2c
XM_043254490.1 mRNA upstream 87330 15754575 ~ 15761754 (+) False kif2c
XM_043254165.1 mRNA upstream 143513 15694208 ~ 15705571 (+) True kiss1ra
XM_043218409.1 mRNA upstream 263911 15580143 ~ 15585173 (+) True zgc:113531
XM_043259942.1 mRNA upstream 284754 15521821 ~ 15564330 (+) False slc6a9
XM_043217526.1 mRNA downstream 3424 15860179 ~ 15875764 (+) True dars2
XM_043260157.1 mRNA downstream 175228 16031983 ~ 16224471 (+) False astn1
XM_043260150.1 mRNA downstream 175229 16031984 ~ 16224471 (+) True astn1
XM_043260163.1 mRNA downstream 175229 16031984 ~ 16224471 (+) False astn1
XM_043260171.1 mRNA downstream 175229 16031984 ~ 16224471 (+) False astn1
XR_006252462.1 other upstream 1066107 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1066380 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1669469 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1669469 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2975939 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 410288 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1175564 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1505490 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1710086 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1750497 17607252 ~ 17608092 (+) True G13111

Expression Profile