RNA id: XM_043217889.1


Basic Information

Item Value
RNA id XM_043217889.1
length 4332
RNA type mRNA
GC content 0.40
exon number 18
gene id nrbp2a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15193555 ~ 15213198 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGAATCGTTTTATGACACGAGACGGTGAAAGGACCGCTGTGCGTATCGTCCAAGCTTTACGGTAGCATATTAAAAAGAGGAAATTCAGAAAGCTCCAGGCAGCCAGTCGGGAAAGCTGGACTGAGATGAAATGATGCCTGTAGGTCGGGCTCTTTAGCACACTGAGTGTGTTTAGGGTGGACTGCGACCCACGTCTCACACGTACGAGACTGTCTGCCATCGGCAGCTTTATCCCTCTTCAAAGAATCTTTAAGGATGGGACTAATTTCACTGCAGCGCTGAATGTTTAGTGTCGCTTAAAAGGAACGCTTTTTGCAAATCGCGTCGCGTGTTGCCGCGTTTCTGAGCGCTTGACGACCGAACTGTAACTTGAAATCGTGACCAGCGATATTCGTCAATGAAACGCGTTTGCGGCTACAACGTTGCAGCAAGCCTCGGGAGGTCCTGCGTGCTCAGTTGGTCTTAAAGGAGCAGCCAAAGCAGCACGCGAGGGTAAAATGACTATGTCCGTCCCAGAGAACATATCGGGGTCCGGGGGGAAAGAGGAGGAGAGTGAAGATGAGAGTGAAATCTTGGAGGAAAGCCCCTGCGGCCGCTGGCAGAAGCGACGGGAGCAGGTCAGTCAGGGAAATGTCCCAGGCATTGAGAGTGCGTACTTGGCCATGGACACCGAAGAGGGGGTGGAGGTGGTGTGGAACGAAGTGCAGTTTTCAGACAAGAAGGTTTTCAAGTCCTTTGAGGAGCGGATAAGGGAGATGTTTGAGAACCTGATGCAGGTGGAGCATCCGAACATTGTGAAGTTTCACAAGTACTGGTTGGACATGAGAGAGAGCAGGGCTAGGGTGATTTTTATCACTGAATATATGTCATCTGGAAGTCTCAAGCAGTTTTTGAAGAAGACCAAGAAAAACCACAAAACTATGAATGTGAAGGCATGGAAGCGTTGGTGCACACAGATACTCTCTGCACTCAGTTACTTGCATTCATGTGATCCACCCATTATCCACGGTAACCTGACCTGTGACACCATCTTTATCCAGCACAATGGCCTCATAAAGATCGGCTCAGTTTGGCACAGGCTGTTTGTTAATGTGTTTGCTGAGGCCATTCATGGGAATGTGCATCAGCATCGAGATGAGGTGCGCAACCAGCATTTCTTTGCTCCAGAGTACGGCAttGCTGCAGATGACTATGCCATAGATATATTTTCATTTGGCATCTGTGCCTTGGAGATGGCAGTACTAGAAATCCAGGCCAATGGAGACACTGCTGTTTCGAAAGAGGCTATTGATCATGCTGGACAATCACTTGAGGACCCTCTCATGAGGGAATTTATCCAGTCGTGTGTGCGCACAGAAGCCAAGACGAGACCTACAGCTCATGACCTGCTGTTCCACAGAGTGTTATTTGAGGTCCACTCCTTAAAACTGCTTGCGGCGCACTGCTTTATCAATAACCAGTATCTCCTTCCTGAGAATTGTGTGGAAGAGAAAACGAAATCTTTTGACCCTAACGGCATTATGGCAGAGATTAATCACCGTGACCGACCTGGAGTCCATCTAAAgTACTCTCACGTTTCTCCTCTGGAGCTTGATAAATTCCTTGAGGATGTGAAGAACGGCATATATCCCCTCATGAACTTTGCTTCCCAGCGGCCGCATCCTATCCCCCGCGCTCTTTCTTTGTCACAGGAACAGATGGAGACTGTGAAGACCCCAACCCCAGAACCACAGGAGACTGAAACCAGAAAGGTTGTCCAGATCCACTGTAATTTGGAAGCGAATGAGGAAGGCACGAGAAGTCATCTCTcgctctttttaaaaatggatgaCAGGCTGCACCGGCAGCTTAGCTGTGATGTTTTGCCTTctgaCAGTCCCAAAGATTTGGCTAGCGAGTTGGTTCACCATGCTTTTATCAGTGAGGAAGACTGCGAGAAGTTGGCGTGTTTTCTTGAGGATGCATTATGTAAGCACTGGTCAGGGACGTCCACCTCCCCTACTGCCATGGCTGTGATGTACTAGGTCCAGCTGGTCGCATAGACAAACAGAGATTAAAGACTGGGCCAGAGCATGAGGAAAAAGATATGGCGAGACATCTGGAAGAGGGAAATGAGACCAAAATCGCAACATTACATAAAGAAGGTCATGACAGGATGGCTTCAGAATAAGATGGGCCTGGGAAGGAAAGCTTGCACCATACCGTATGGTACCTGCACAAACTCCAAAGAGCTCAAACTGTTCATTTTGATCTTGAAGGCTGAATTACTGCTATCATCTCACCATGACGAACGTTTCCATCACTTGCAGAGGTTCTGCTTCAGtgccagaatttttttttttttttttttttaagagtttaaagggtttttttcaTCCCTCCAAGTCATTGTGCCTACATGGCATAATCTATCCTCATCTCGCAAAGGACAAAATCTCAAACAGACAGTTTTGTTCCagataaatgtgttatttattattttaaacaattaatacaTGGTCTTGGTATACATGTTTAAACGTTCAAGCAAGGATGTGCGTTAAAATGTTTGAGTCTACATTTCTAAATTATCTTTTTCTGTATGCTTTTACAAGCTGATGTTAAGCAAACGAATGTAAGGTACTATGACAAAAGTGCTCTTGGCACctattatactaatatatttctatttctttttttaaacttaatttcttGCTCTTAATCTTGAATTTTTAATCTTAATCTGTTATGTTTATGTTGAcctcaatttctttttttcatgcatatgGTAACTTTGCAGATGTTTGTAAACAGTGGCAATGGCTGTTTTCTTAAGTAGTACGTtaccattcaaacattttagatcagtaagattttggggatttttgtaagaaattaattattttatccaACAAGGGGATcattaagtttattaaaaatgacagtaaaactTTTACATTGGTATGAAACAATCtggttttattaaatgctgttcttttaaactttctattaacCGTAGAAGTTTgaagaaatgtttatattttgtggtctccacaaatattaagcagcattttgtttttacaatattacggttttactgtatttttgataaacctctttcaaaaaatattttacaaaatctttCTGACCTCAAATACACATCtgataatttctcaattttaaGCAATAAAGCAGAATAGCACTTCGTCTAGATGTCTTTTACCAAGAAAAAAGCTGAACTAAAGTCTTTAAATTTCAGTTAAACgtttgcttttattcatttagcagaaaTATGTAACCAAAGCAAATGATGCAAATACAAACAATTTATCATAAGAGCCTTTTGAGCAGCTAATGACACAGGGGTCCTGTTCATGAGTTTAACAATGTTGAcatgggatttttttatttgccttttaaatgtgaatatgaCCTGATCCTAGATCAGTTGACTGCTCAGAGCTATTTAACACATTTGGGCCAGGTTTACTTTTAATTCTTTCTTTGTCCCTTACACTAATTAATGCGTAGCGATAGCACACAATAAACTGACTGTTGACTAAATCATAAGAAACAATGGTTTACTTTAAGAAATCCCTCCATTGGGTAAGAAGGGCTTTTATTCTGTTtggcatttacattttaccacagtatgtgtatattttatgtcatataaaatgattcataCACTACTTCGTATGTATTCCATATGGGAGAACTTGAATCATGTCAAGGCCAAAGACGTACTGGGTGCAATGCTGGCAAGTCTGGGTACTACATTGCAAATATAACATCCTGTATTTGACTGATACTTGCATATTTACAACAGTATTCATTCTATGAAAACATCCGTGTTGCCATGCCGTCCAAAGCAATAGTATCTGTTTTAGGGATGCTTTCAGTACTGTATTCTCCAATGGCTTTGACTTCCCaatattacttaaaaacatGTGCATGTCAGGAAAGGAATGCTTTTACAGAATTGTTAGTTTTTGTTATATTGGCATGGTAGTAAAATGGATGTATTGCAGCttcagaaaaaatattacaaggGATCTCCATTTATTCTTGCAAATtgaaataattcagaaaaaaagtcaccaTCCTCCCATGCAGTGTTATGAGACTCCAATGTCTTGCAATGTAATAAATTTGTACGTAGATACAAGAGACATGAATGTACAGTgagtaataattttaatatactcTTCCTCATTCCTGGTGTCATTTCTCATCTTAATCGAATGCATTAACCAGACTTTgggcagttttattttatttttatttgtgttgaaATTGTATACTGTGACATGAAATactattacattaaaataaaaaattaacaatttaa

Function

GO: NA

KEGG:

id description
K08875 NRBP; nuclear receptor-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18059 lncRNA downstream 258530 14934769 ~ 14935025 (-) True G12199
TU18026 lncRNA downstream 338386 14853694 ~ 14855169 (-) True G12175
TU18027 lncRNA downstream 340003 14852910 ~ 14853552 (-) True G12176
TU17995 lncRNA downstream 418064 14773753 ~ 14775491 (-) True G12161
TU18248 lncRNA upstream 10013 15223211 ~ 15223455 (-) True G12308
TU18253 lncRNA upstream 24761 15237959 ~ 15240826 (-) True G12313
TU18255 lncRNA upstream 24761 15237959 ~ 15240826 (-) False G12313
XR_006252728.1 lncRNA upstream 333837 15547035 ~ 15553546 (-) False LOC122359617
XR_006252727.1 lncRNA upstream 333837 15547035 ~ 15553546 (-) True LOC122359617
XM_043258830.1 mRNA downstream 510 15180965 ~ 15193045 (-) False puf60a
XM_043258848.1 mRNA downstream 510 15180965 ~ 15193045 (-) True puf60a
XM_043258858.1 mRNA downstream 555 15180965 ~ 15193000 (-) False puf60a
XM_043258839.1 mRNA downstream 556 15180965 ~ 15192999 (-) False puf60a
XM_043258824.1 mRNA downstream 557 15180965 ~ 15192998 (-) False puf60a
XM_043217260.1 mRNA upstream 10758 15223956 ~ 15229668 (-) True bfsp2
XM_043256784.1 mRNA upstream 34887 15248085 ~ 15255907 (-) True prpf4ba
XM_043259972.1 mRNA upstream 350686 15563884 ~ 15579706 (-) False ccdc24
XM_043218396.1 mRNA upstream 372319 15585517 ~ 15674874 (-) True b4galt2
XM_043217212.1 mRNA upstream 463005 15676203 ~ 15682026 (-) True atp6v0b
XR_006247858.1 other downstream 4762 15188656 ~ 15188793 (-) True LOC122328939
TU18236 other downstream 41783 15147204 ~ 15151772 (-) False smarcd3a
XR_006247859.1 other downstream 62840 15130599 ~ 15130715 (-) True LOC122328941
XR_006247132.1 other downstream 66064 15122525 ~ 15127491 (-) False faim2a
unassigned_transcript_207 other downstream 319173 14873076 ~ 14874382 (-) True LOC122360578
TU18553 other upstream 1011581 16224779 ~ 16230221 (-) False pappa2
TU18714 other upstream 1458378 16671576 ~ 16673710 (-) True G12658
unassigned_transcript_208 other upstream 1587233 16800431 ~ 16801951 (-) True LOC122356638
TU18963 other upstream 1593063 16806261 ~ 16806738 (-) True G12839
TU18966 other upstream 1609427 16822625 ~ 16823073 (-) True G12841

Expression Profile