RNA id: XM_043218174.1


Basic Information

Item Value
RNA id XM_043218174.1
length 4165
RNA type mRNA
GC content 0.48
exon number 14
gene id rnf220a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15360754 ~ 15472750 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCACTGCACCTCCAACACTGTTTCCACCTCTGAGCAAATCTCTGCCTATCGTCTCTACTTTGCTGCTGAACGCAGACTCGTTCTCATCGGTACATGCAACTGATACAACTCTCAACGCACGACGCGACCCGGGAAACTCTGTCTGACGCGCGGCGACCGTCTCGCGTTCTTTTCTCGAGGTGCGACTCTACTTCGTCTCTCGCGCTTCGCGGCGATCTTCGCTCTGCCGTTTCGAAAAGTTTCAGTTGTGGGGATAAAAGGACAGCTAAACCTTCCAagggatttttttaaacaacGTGGAGGACCGTCGAGGATGAGTCGCCAGTGAGAGCAACCCCTGATTCTGCCAGAGAGACGACAACGCAAAAGTTTGCACCATTCTGCCCATACCGTTTACCccgtctctcttctctctcaccCTCCCACACCCCTCTGCTTTCGCCCCTCACCCCCTCCGCCCAACCCCAGCCCAGTCTCCAAAATGGACTTGCACCGGGCGGCTTTCAAAATGGAGAGCTCCTCCTACCTGCCCAACCCGTTAGCATCCCCAGCGCTAATGGTACTAGCATCAACGGCGGAGGCCAGCCGCGATGCCTCCATCCCTTGCCAGCAGCCTCGCCCATTCGGCGTGCCAGTTTCTGTGGAGAAGGACGTTCACCTTCCCTTCAACAACGGTTCCTATACGTTCGCCTCTATGTACCACAGGCAGGGTGCTGTACCACCAGGCTTCCCAAACAGGGACTTCCCTCCTTCCCTCTTACACCTCCATCATCAGTTTGCCCCACCAAATCTGGACTGCTCCCCCATAAGCATGCTCAACCACAGCGGTGTTGGAGCCTTCCGGCCCTTCGCTTCTCCTCCGGAGGACCGTGATGGAGCGGGAGGTGGATACCAGTCTGCCTTCACCCCGGCCAAGAGGCTAAAGGGCTGCCTGGAGGCTGAGGCCTCTCCGCACCTGCGCTACTCGGACGCAGAAGGGAAAGAGTATGACTTTGGTGGTGCTCAGATCCCCTCCAGCTCGCCTAGTGCTCTCAAAGCTGTGGAAGATGCAGGGAAGAAGATCTTCGCAGTGTCAGGCCTGTTGTCAGACAGAGAAACCTCATCCAGTCCGGAGGATCGCATTGAGCGCTgTAAGAAGAAGGTGTCACTCTATGACAGTCAGGCTCCCATCTGCCCCATCTGTCAGGTTCTGCTGCGTCCAGGAGAACTTCAGGAGCACATGGAACAGGAGATGGAGAGGCTCACCCACATGCACATCAGCAAGAACCCATCACACAAGGACATCAACGCAGCTCCAGGCACACCGAAGTCTCTCCTGTTGTCAGTGCACATCAAACGTGAGGGCGAGTCTCCAGTTGTGTCCCCGCTCTCCTCTGATGAAGCTCACCATTCTGACAGATACCAGACATTTTTACGAGTGCGAGCTAACAGGCAAACACGATTGAATGTCGATGACCTCTGCTGGTGCAGGCGCTACGCCAAGGAAAGTTTCAAAAGTCCCCCAATCCCAGTGCCCAGAGGAGTGCCCCTAGCCCCTTGCTGCCTGCGGCATGCCCGGATTGGGAAGATGAAGCGCCGGAAGCCTGAGGATGGACAGGTATGTCCACTGTGCAGCGCCCCGCTGACAGGGACAGAGGAGGAAATGAGTAGGCATGTGGAACAATGTCTGTTCAAGAGGGAAGGTGCAACAGAAGAGGATTCCGCAGATGTCGAAGGAGAGAACGGAACGCGGTTTGAGGAGTATGAGTGGTGCGGACAGAAGAGGGTCCGAGCTACTACATTACTGGAAGGTGGTTTTAGAGAAATGCCTTCCACCAGTAATGGCGAGAGCAGCAAACAGGAGCCAAGCTCTTCATCTTCGTCCTCCACACCGAGGACCTGTAAAAACAGCGAGATCGAGAAGATCACAGAGGACTCCACAGCGACCACACTGGAGGCGCTAAAGGCCCGCATACGAGAACTGGAAAAGCAGATCCTCAGAGGAGACCGATACAAGTGTCTCATATGCATGCGCAAGCCGACCCAAACGGGGCATGATGGCAAGCATCAGGCGGTCGAGAGGCACGGGAGCGCAGAGGCCCTGCAGCTCGGCGTGTACTGTTTGTACAGAGGCTACGTAACGGGCTGCAGCACTGCCACTGCGGCCAGCAGCGGGATTAAGAAGCTGCTGCCGCTCCGGAGGGACTCGTATACAATGCCACTCACCTCCATCCAGTGTTGGCACGTGCACTGTGAAGAATGCTGGCTAAGGACTCTGGGAAACAAGAAACTCTGCCCACAATGCAACACCATCACGTCGCCAGGGGACCTCAGGCGTGTGTATTTGTGAGCTAAACAGCTCggattcttttcttttgttgttgttttgtgttacTTTCGTTTCCATTTGCGCTAGTGTTTTTGGTTTCCCCATCCCCTGAGGGAGTGAAGTATCGTCCTGACCATGAGAGGCTCGAGCACAGACTCGCACTGACTTTAAATGGGAACTGTCTTCACAAGCATAGGACTAATGAGGACTGTGTAGACTCAGTTCTCTAATATAATTGCTTATGTGAAGAGTCTTCCCTCTTTTGTTGGTCCATGGTCCATCCTCTCCAAAGTCAAAGCTTGGTTCCTTGATGAGGAACGTGATCTTCTCAGATGAAGGAAAGAGTACTCATTCTGTCCCTCCACCcgcactgctgctgctgctcttcGTCTACCACTTTTGCAACTTCTTCTCCAAGACCGCTGACGCTAACCTGACTGGAACATCAGTCTGACGATAAGAAGAGACTTTAAACGGACCACCCGAGGCTCTCCAGAACCCTTCGATCTCGATTCTCCATTGTGTTCTCGTTCACCCCAAATCATTACTTCTTTTGTGGTGTTCTAGTGATGTCAACCAAATTCAATGAATCAGTGCAAGCACATGTATAATAGTCTCTGTATGTTTACAGTGTTGTGAGTAAATGACATAGAGAACAAAACACTTGtatacacgcgcacacacatggacatacacacgcacatacagaAGTATATATTGAATAAGAGTCCAGTTTTAGTTGGGGGTGGCTTGGGTCGGGAGGGAGGGGATATGTTTCAATCTtggtgaattaaaaaaaaaaaactaaagaaaaaagaaaagaaaaccctctgtatttttaaagcagatGTTGTTGTCTTGAAGTTGAAGTTGTATTTCATTGTACAGGAAGaaatttaagtaataataataataaactactCGAACTAGGACTTAAAAGATTTAGgtgtacatttttctttgaaatatacagtaaaaactgtagaTTTAATCCTGAAACAAGGGAAagtatctttctttttctttgcttttttctaAGAAATGGAAAGATTTCCTTTTATTCACCCACGTTTTTCAGCGTTTTCGACTTTAATGCTGAATGCTGTGTGTCTgttacaaacaaatgaaatgactGCTTATTCATTCCATTGAACATACAGTATTAAGACCCCTGACAGGTTGCAAATCATCAGTTTCTTTCCTCAAAAAAAGGGACTTTTCAGAAAACGCCAAACACTTAGGGTGGTCTCATAAGTTACGTTCAGATTTCCTCTTGGagcctttttttcccctcaaagaAAGAACTGGAAGAGTCAAGACTTGTTTCCCTGACTGGCCGACTGACTGACTGCTCACGTTTTCCCTAGGAGTGAGACCGTGTGCTTTATATTTGTACATCTATGTATTCTGTGATTTCTGTATTGATGTAAGCGcaaaaaaggaagaaatgaaAGGTCATTGCTGATCCCAACATCACAATAAACAGTCAAATGTTGCATTTGTTATAACTTATTCCAACTTATTCTTTAAAGCTTCACCATAGCTGGGTCACAgtcaaatactgtaaaaacagctGTACCGATATCTTCAAGATTTACACTTAAAAATCACTCTTTCCATATGTAAAATACCTCTCTCTGCAActattttgtaaaatacatgTAGTAAATAAGGATTAGGTTTGACTCTTTGTATTCTTCCTTTGCCGAACAATTCGTTCCTGCCCCAAAGATGACAGATTGCACAAGACGATTGTGTGATATGATTTGTGTCCTTGTATATTCTTGAAAATGGTACGTGTCTTTCCCGTTTGTAAGTTACATTTGACATCAATTAAATGACTGTAAATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18270 lncRNA upstream 107712 15252494 ~ 15253044 (+) True G12321
TU18267 lncRNA upstream 111507 15245312 ~ 15249249 (+) True LOC122357435
TU18172 lncRNA upstream 180502 15143946 ~ 15180254 (+) False G12255
XR_006252526.1 lncRNA downstream 25774 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 203453 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 250336 15723086 ~ 15804921 (+) True G12432
TU18415 lncRNA downstream 259069 15731819 ~ 15741601 (+) False LOC122356092
XR_006252280.1 lncRNA downstream 259080 15731830 ~ 15742798 (+) True LOC122356092
XM_043254484.1 mRNA upstream 91260 15267129 ~ 15269496 (+) True tmem53
XM_043256812.1 mRNA upstream 94551 15261961 ~ 15266205 (+) True opn4.1
XM_043256838.1 mRNA upstream 97842 15260575 ~ 15262914 (+) True LOC122357442
XM_043256794.1 mRNA upstream 100321 15256044 ~ 15260435 (+) True si:dkey-154p10.3
XM_043253230.1 mRNA downstream 44056 15516806 ~ 15518976 (+) True klf17
XM_043259956.1 mRNA downstream 48298 15521048 ~ 15564330 (+) False slc6a9
XM_043259949.1 mRNA downstream 48820 15521570 ~ 15564330 (+) False slc6a9
XM_043259962.1 mRNA downstream 48829 15521579 ~ 15564330 (+) False slc6a9
XM_043259942.1 mRNA downstream 49071 15521821 ~ 15564330 (+) False slc6a9
XR_006252462.1 other upstream 577779 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 578052 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1181141 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1181141 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2487611 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 794293 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1559569 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1889495 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2094091 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2134502 17607252 ~ 17608092 (+) True G13111

Expression Profile