RNA id: XM_043218310.1


Basic Information

Item Value
RNA id XM_043218310.1
length 1932
RNA type mRNA
GC content 0.37
exon number 7
gene id si:dkey-94e7.2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14348581 ~ 14351572 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTACTGCTCATTTACATGGCTGACTTGTCACCTatcaattgttttaaatagttaCACATATTTTAGGTTAATTATATATGTGGGATATTTAGGTCAAAAACCTGCAGTGAATTTACAAAATCCACAAGGAATGAATTCACGCTGAGTTAACAGTAGACCAGTGCCTTAAACCGATTAGCTGTGGATTAGTCTGTTCGATTTCTAATCCACACCAATGCACTAAGGCTGACTCTAAACAATGCACTTTTCAGTGTAGTATCTGCAAACAACTCCAGAGGGAAGTCATGTGTTGTCTTTAGAGCATCTTTGCTTTGAGCAAGATGTCCAACATATACACTCTGAGAGAGATGTTTGGTGGCCAGTGGTCATCTAGCACACGACTCGATGGCAAAACAGTTATTATAACTGGAGCAAATACTGGCATTGGAAAAGAAACCACCAGAGACCTGGCAAAACGCGGGGCCAGGATAATAATGGCTTGCAGAGACCTTGAGAAAGCAGAAGGAGCACAGAAAGAGATCGTGGAGGACTCAGGGAACCAAAACATAGTGATCAGGAAACTAAATTTATCTGACACCAGGTCAATCAGAGAATTTGCTGAGGTAATCAACAACGAGGAAAGAGCTCTTCACATACTCATTAACAACGCTGGGATAATGATGTGTCCCTACTCTAAAACAGCAGATGGTTTTGAGATGCAGTTTGGTGTCAACCACTTagGTCACTTCCTGTTAACCTTCCTGCTGATTGATCTGCTGAAGAGATCTGCCCCCTCAAGAATCATCATCCTTTCCTCCATGGCTCATAGTTGGGGCACAATAGCTCTTGATGATATCAATAGCGAGAGGAATTACCACAGCAGGAGGGCATATGGTCAGAGTAAATTGGCCAATATCCTTTTTACTCGTTCCTTGGCCAAAAAACTCACAGACAAAGGTGTTACAGCATACGCAGTCCATCCAGGAATTGTGCGAACAGAACTTAAAAGACATATGAATCTCGGACTTCTAATCATGTGGAAGGTTGTCAGACCTTTCACAAAGACCCCAGTGCAGGGAGCACAAACTACAATCTACTGCGCAGTGGAACCAGAGTTAGACAAAGAGAGTGGAGGTTACTACAGCAACTGCAGACCTTCACAATGCACCAGAGCTGCAAGGGATGATGAAATGGCTGAGAAACTTTGGGATCTCAGCTGCAAAATGTTGGGGATAGTCTGGGACTGAACACTAAATAGTCTGTTTTCCataaacaattaattatatccattgttatttactattattattgttatttacaaTTACTTCCAACATGAACACCCAAGTAAATTCCAAGGCACAAACTCttatcaacaaacatttctttcttagtataggttgtttttatttcaagtcaaacaacatttccagtcattcttttttccattcacaGACCACCATTTGCATTATCAAATCCATTTTCATTATCAAATGGTCTAGACTCtgatataattacattatacgTCAAGCATGTAACAATTATACACTGGAATTAAAGTTGATTTTAGCTTTTAACCTTCCACGGGTAATCTTTCCTTAAACCCCACATAGTTTTTTTGAGAACTAATTTGTCCAGATTCAAGAGCTTCTTAGATCAAGCCCTGTCTATACACATTCATTTTTTGATTCTGTCAATGTTTGTTCAATCTCTtttcaatgttttgtttatgaTTTGTCAGATTtagtttgtaaaatataatctgtgttaaattttaattatgtaaatcaGATGAGGAGAATgtgtacatgtacatatattacaaaatatattgagCTGATGCAAATAAGTATATAACACCTTAATTTATACAATTAATCAAGTGATCCTTTGTAAAGGTgatgcaatttttatttgatatgagcacaataaaaaataatcacatttaatgtgAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17537 lncRNA upstream 162795 14136114 ~ 14185786 (+) False G11832
TU17582 lncRNA upstream 181626 14108155 ~ 14166955 (+) True G11856
TU17577 lncRNA upstream 184204 14140050 ~ 14164377 (+) True G11855
TU17578 lncRNA upstream 184204 14140050 ~ 14164377 (+) False G11855
TU17576 lncRNA upstream 197722 14131759 ~ 14150859 (+) False G11855
TU17629 lncRNA downstream 18116 14369688 ~ 14371834 (+) True G11894
TU17630 lncRNA downstream 20346 14371918 ~ 14375750 (+) True G11895
TU17635 lncRNA downstream 37413 14388985 ~ 14437409 (+) True G11898
XR_006252197.1 lncRNA downstream 143878 14495450 ~ 14497873 (+) True LOC122355240
TU17656 lncRNA downstream 208288 14559860 ~ 14603545 (+) True G11914
XM_043257257.1 mRNA upstream 74961 14262564 ~ 14273620 (+) True ankrd33bb
XM_043257245.1 mRNA upstream 86167 14245255 ~ 14262414 (+) True march6
XM_043257269.1 mRNA upstream 103637 14242673 ~ 14244944 (+) True atpsckmt
XM_043254388.1 mRNA upstream 106709 14233819 ~ 14241872 (+) True LOC122355826
XM_043220352.1 mRNA upstream 130030 14214494 ~ 14218551 (+) True socs6b
XM_043221266.1 mRNA downstream 12349 14363921 ~ 14368090 (+) True tcea1
XM_043221254.1 mRNA downstream 28499 14380071 ~ 14410644 (+) True atp6v1h
XM_043221246.1 mRNA downstream 28522 14380094 ~ 14410644 (+) False atp6v1h
XM_043221250.1 mRNA downstream 28523 14380095 ~ 14410644 (+) False atp6v1h
XM_043255729.1 mRNA downstream 70664 14422236 ~ 14426212 (+) True oprk1
TU17566 other upstream 168966 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 168966 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1475436 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1475496 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1722194 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 424750 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 424750 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 1915471 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2680747 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 3010673 17362245 ~ 17367861 (+) False sppl2

Expression Profile