RNA id: XM_043218349.1


Basic Information

Item Value
RNA id XM_043218349.1
length 4116
RNA type mRNA
GC content 0.41
exon number 19
gene id nlrb5
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21227323 ~ 21246000 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgacCAAAATTTCAGGCCCCAGAAGGAAAAGCAACTCACAAACATTAGTTCTTTTGATAAAgcattacttttgttttgtaaataatgagacatattttgcatattgaACCACACCCTGAGAAGCCAGGAGGTATGGTTCCTcagattcattaaaatgtaaaagttctCTAAGGCCTGGTTAacatttgatattattatttaaattcattgcCCTTTAGACTGAGACCAGTTATTAAGAGGTTTCTATTAGAATATTAAATACTGGGCAAGAAACTGCTTTTGCTAAATCAACATGAGATCAAATTGTATTAACGGTATTATTCCAAATGTCATGGACTCTTAACACTTCTTTACGCACAGGTCCAGTCACAGAAAAGGAAGAACCTCAATTAAGTCGTTGTGACAGATTGCGGTCTGAAAAGCATAACTTTCTTAGAGGATTCTCCATAGATCAAGGACAGCGACTGCGACGAAGATGGACATATGAAAATgatGCATCAGTATTTAAAGGAACTGTACGTCAATAtaagctgtcaatcaaacagaAGTATGAGAGCGAGTGGATCTCATTATCTGGCGGGCGAAAGTCATTGTCTGCCCTGTATAATCAACCGGTGATCAttcaggaaaaagaaaatggccGATTTGAGAACATCAGTTTGAACGATCTGTTAATCACATGTACAAAAACTGTCATTCTCCGAGGCGACTCTGGCAGCGGCAAATCCTTCATAGCACAGAAGATCATGTTTGACTGGGCATCTGAACATCTTTTTGATAGTCATTTTTATCTAGTTTTTTATCTGAGATGTGAAGAACTGGTGTGTATTTCTGAGGAGATTAACTTGATTGAGCTCTTGAGCTGCGGTTGTAGTTTAACATCAGATGAGATCTCACGGATACTACAGCAGTCACCAGAGAACGTGCTCTTCATCATTGATGGATTTGAGGAACTGAGACTCACACAGGACATTTACGACATGTCAACAAACATTGATCCACTTGAGAAAGCTTTACCTGGGGTTATTCTATGTGGCCTTATAAGGGGATTCCTCATCCCTGATTCCAAGCTGCTGGTCACCACCAGAACTAAGAACACAGTGAACAAGCTGCTGAAAGGACAACCATGTCTCACTGAAATCATGGGTTTCTCTGAGAGAGGGGTGGAGATATCTTTACAGGAGATATTCAGCCCAGAGTATGACTGTATGAGAGCAAATAAAGCCGGTCTAGATGTAACAAAAGAACCGAAAACCACTACCTCCATCTATGGTGACTTTGTGTCCACTCTACTAAAGCATCACTTCCAGGGTCAGCCTCCGTCTATCCTTAACCTGCCGATAATTGGTCAGCTGGGAGAGATAGGGATGCTGAAACATTCTCAGAGTCAGTCTGTCCCAACCTTGCTAAGGAGTCTGGGTCAGCTGGCAGAAAGGGGGATGCTGGAACAGCAAGTGCTGTTTGATGAGAAAagtgtgaataaaatcatttcagaCCCTGCTGACAAACTATTTTTGTACAGGTTGCTCTCTAAGAGAAGAATCCGTCAGGAGACGATGTTCAGTTTCATGCATCACAGCTTTCAGGAATTATTCACTGCTCTGTACTATGTCCTCCTGAATGAAGAAAAGTCTCAGATGAAAGTGAAGGAGCTGCTCAACACTGTAGAGAGAGGATGGGCTTTGTCCTGTTGGACCGATAGACACTTTTCAATGGCAGATGTAGGGATAACACGTGCAAAGCTGTTGCAGCCTGTGATTCTGTTCCTCTGTAGTCTCTGTAAGAAAAAATTGCTCCCATCGTTCCCTGAATTGGTCAACATGGCTGTCTCTGACAACATAGAAACCCAACTTAAGGAATGGATCAATCAGTATTCACAGAGATATCAAAGTGAACACATACTGTTCATTTTCCATTGCCTCTATGAGCTTCATGAGAAGACATTCACTAGAAAGGTCTTGGATGCTTTGGTTTTGATAGATATGTCTAATATGCCACTGAAAACGATAGACTGTTGGGTGTTGAAGTACTGCTTACAGTGCTGTGAACACATCAGAAACCTGAAACTTCATGTAACACCTGATAATCTGAAGATGCTCCAACCTGTACTGTACCTCTGTAAAGAGCTGTGGTTGACCATGGAGGACATTTCAGATAATGTTGTTGGTTTGCTCTCAGCTGCTGCTGAAGGAAAGACTTTGAACAAGCTCAATATAAAGAAGCTTGACAACTATGGAAACCGAGTTGGATACCTCTCAGGAatctctgtgtctgtcagagATGGAGACATCACGTTGTCTATTGGCACACCAGTCACAGAACTAACTGTAACCTCTCCTCGCTCATTTATTGCCATCGTCAACTGGATGAAATCACAAAATTTtcGTTCTGATAAACATACAGTGAAACTGTTGCCGTTCCTTAAATCATTTCCTGATGTGAAGAAAGTCTGTCTGCAAAAATCAGTTCTGACTTCATCGCTTGCCATTGAAATCCTGTCCTTCATTCAGGCCTGTCCCAGTTTGACTGAACTCAGtatAAATGACAGCGGATGGATAATGTGGGAGCGCACTCAGTTCATGGAGACACTGGAGAAGATGGGTTGGTCTCTGACTGTcTGGGGGACATTAGTGCTGATCAAGCCATGCGTGGAGAGATGTACAGAAGAGAAGCTGAAGACAAAGCTGGAAAAGAAGACAGTGCCACTGGAAGAGAGTTCACATTCTGTGTCTTGCTCATCATTAAAAGatgaatcatcatcatcagtacCCTCAcaaATTTGGACCATTTCAAGAAGAACTGCAGTGCAAATTAGCACAGGGTTGCAGTCTACTAAGAATTCCTCAGAAGATGCAGAAGCGTTCGCGCCAGAATTGAGCGGCGATAAAGACAAACTCAAGAATACATACAGGTTCATGTGTGAACATGCTGGTCAGTTTCGGTGCAGTCTGACCGGTCTTGTGTTTGTGATGGAGGGTGAAGGAGAGGTGCTGTATAGTGTGGACTCATGGGATCCTTGTCTGTTATATTGTTTGGGTCACATGCGGCCTGCAGGACCTTTGTATAACATTGACTGTTCTGCAAAATCAGTCTCACAACTACACCTTCCTCACTGTGTGATATTTTCTGaGGAAAATAAGGAGGGTTTGGCTGTAGCTCATTTCACTGGTGGTAATGTAGAAATAATACCACCGCTTAAAGTGACAGAAACTCATGCGATCATTGACATTGAAGACCTTAGTCGTTTTGGACTGATGTGGATCAAAACAAAATTTGGCTTTCCCATTGATGGCCAGGTTTTGCTCTTTCTTCGACCAGTAACTATcgaacagaaacagaaaatactTAACGTCCACTTGCTTCCAGGGAATGTTCCAGTATCAGAGGTCCAGCATTTGCACCACAATAAATCATACATAGAGACAAGTTCAAAATGCAGTCTGTTTACTGACAAAGAATACAGTCTGTGTTGTCAGCCAGAGGACTGTGAAGTGCAACCTATgagtGAGATTTTTCATCTTGATAATTTTGGCCCAAATTATCATCCCACTTTTGAAGTGTTTCTGGATGTAAATATTAGGGAGGTCAGACTGGGTGTTTTGGACAAAACTGAAAATGGGAAAGTATGGCACAGACGGCTAATGCTTCCTACAGcacaGAGTAAAGGTGTAGAACCTCCTGCGCACAAAATGATCCCAGAAACTGAATTTGTGAACACACATGGAGATAAACTCATTCAGAGAGTTTCTTCGGCGATGCCGATTGCTGACAGTTTGAAGagcaaaaacataattactCCCGAAATGTGGGACAATATTGATGATGCAGGAACATCACAGCAGAAAATGAGATGCTTGTTGAAGGCTCTCGAATCTGGAGGAGATAGTGCAAAAATAGAATTTTGCAAACTGCTGATGGAGAATGAATTTGCTCTAGTAAATGAACTAGCACCTCATTTATAACATGTGCATATGCATGGATTTGATCTTAAAGTAAAATTCACACTCAGAACTTGTTGTTGGTAGCGAGAGATCCAGATGTTTCTGTTTTCCAAATTTAGATTAATTAACACCTGCTCATGTTCACAAAGCATGATTTGTGATGAGCAAAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20627 lncRNA upstream 59752 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 74857 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 77503 21150658 ~ 21151136 (+) True G13994
TU20641 lncRNA upstream 78632 21149221 ~ 21150007 (+) True G13993
TU20640 lncRNA upstream 80127 21148180 ~ 21148512 (+) True G13992
TU21039 lncRNA downstream 96371 21342371 ~ 21346101 (+) True G14234
TU21010 lncRNA downstream 119808 21365808 ~ 21370499 (+) True G14212
TU21083 lncRNA downstream 287245 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 310844 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 470771 21716771 ~ 21717992 (+) True G14315
XM_043260565.1 mRNA upstream 23766 21185209 ~ 21204873 (+) True arhgap12a
XM_043255893.1 mRNA upstream 83349 21131009 ~ 21145290 (+) False epc1b
XM_043255881.1 mRNA upstream 83349 21133610 ~ 21145290 (+) True epc1b
XM_043255886.1 mRNA upstream 83349 21133612 ~ 21145290 (+) False epc1b
XM_043255904.1 mRNA upstream 98310 21123039 ~ 21130329 (+) True LOC122356829
XM_043254496.1 mRNA downstream 145118 21391118 ~ 21397540 (+) True zgc:152670
XM_043254497.1 mRNA downstream 145118 21391118 ~ 21397540 (+) False zgc:152670
XM_043219271.1 mRNA downstream 177826 21423826 ~ 21462693 (+) True kcnab1b
XM_043219247.1 mRNA downstream 216798 21462798 ~ 21474564 (+) True pask
XM_043219257.1 mRNA downstream 216799 21462799 ~ 21474564 (+) False pask
TU20649 other upstream 63817 21163942 ~ 21164822 (+) True G13998
TU20650 other upstream 63817 21164297 ~ 21164822 (+) False G13998
TU20478 other upstream 724416 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 743421 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 756023 20467268 ~ 20472616 (+) False gbp2
TU21005 other downstream 61407 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 91682 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 91682 21337682 ~ 21361708 (+) False G14211
TU21079 other downstream 235676 21481676 ~ 21482318 (+) False LOC122354659
TU21151 other downstream 469355 21715355 ~ 21716287 (+) False ccl20a.3

Expression Profile