RNA id: XM_043218532.1


Basic Information

Item Value
RNA id XM_043218532.1
length 7945
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC122324242
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22134354 ~ 22326172 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAAGCTCTCGTCTCTGCGCTCCGCGTCCGTGGCAGCATCCACTCACTCTTTTACTACTGCCTGCGATGTGACTCCACgccgctcgctcgctcgctggAATATCACCCTGCGTGACAAGTGACGGATTTTACGCGCACGCCACGCCGTCCGGTTTTCCAAATTCAAGGGGGACACCGCGGCAGCGGCCAATGCCTTTTATCATGACTGTGGGATTAATAACGGCTTTGTGTGCTGTAACTGCCGTTTTTGCGATGGAAGaAACGTTAATGGACACCCGGACCGCCACAGCAGAGCTCGGGTGGACGGCGTACCCTTCGTCAgggTGGGAAGAAGTAAGTGGCTATGACGAGAATCTCAACACCATCCGAACGTACCAGGTGTGTAACGTCTTCGAGCCGAACCAGAACAATTGGCTTCTCACCACCTTCATCGCACGACGTGGTGCTCAGCGCATCTATGTGGAGATGCGTTTCACCGTCCGAGACTGCAGCAGCATCCCGCGGGTGCCTGGATCCTGTAAGGAGACCTTTAACCTGTACTACTACGAGACGGACTCCGTCATCGCCACCAAAGGTACGGCGTTCTGGATGGAGGCTCCGTATTTGAAGGTGGACACCATCGCAGCGGACGAGAGCTTCTCACAGGTGGATTTTGGCGGTAGATTGATGAAAGTGAACACAGAGGTGCGGAGCTTCGGTCCGTTGTCGAAAAACGGCTTTTATTTGGCATTTCAGGACTACGGCGCATGCATGTCCCTGCTGTCTGTCCGTGTGTTTTATAAGAAATGCCCTAGCGTGGTGCAGAACTTTGCGATATTTCCAGAGACCATGACTGGCGCAGAGAGTACCTCGCTGGTGATCGCTCGTGGGATGTGCATCCCAAATTCTGAGGAAGTGGACGTACCTATTAAGTTGTATTGTAATGGAGATGGAGACTGGATGGTTCCGATTGGGAGCTGCACCTGCAAGGCAGGATTCGAGCCAGATAACGGGAACGTTTGTCGAGctTGCCCTCCGGGGACGTTCAAGTCCAGTCAAGGAACGGGTTTGTGTCTTCAGTGTCCGTCCAACAGCAGGTCCACGTCTGAAGCGGCCACTATCTGCGTCTGCAGGAACGGCTACTACCGAGCAGACGGAGAACAGCCAGACATGCCCTGCACCaGTGTTCCCTCCGGACCAAGAAATGTCATCTCTATTGTGAACGAGACCTCCGTGACTCTGGAGTGGCACTCCCCACGTGAGACGGGCGGCCGCGACGATGTCGTGTATAACATTATTTGTAAGAAATGCCAGACTGACCGTCGTTCTTGCTCTCATTGCGACGATAACGTGGAGTTCCAGCCCAGACAGCTGGGTCTGACCGATTCCAGAGTCTTCATCAGTAACCTGCTGGCACACACTCTCTACACCTTTGAGATCCAGGCGGTCAACGGCGTCACCAACAAGAGCCCGTATCCTGCCCAGCACGTCTCCATAGACATCACAACCAACCAGGCTGCTCCGTCCATTGTTCCCATAATGCATCAGGTCAGTTCGACGATGAAAAGCATCACGTTGTCATGGCCACAGCCTGAACAGCCCAATGGAATTATTCTCGATTATGAGCTGCGCTTCTATGAGAAGGAGCTGTCTGAGGAGAACTCCACGCAGGTGAGGAGTCAGACGAACACGGCTCGTGTGGATGGATTACGGCCGGGCACCATGTACGTGATGCAGGTTCGCGCCAGGACGGTTGCCGGTTTCGGCAAATACAGCAGCAAAATGTGCTTCCAAACCCTCACAGATGaCGACTATAAATCAGAGCTGAGGGAGCAGTTGCCACTGATTGCGGGCTCAGCCGCGGCTGGAGTGGTCTTCATTGTATCTCTGGTGGCCATATCTATAGTCTGTAGCAGGAAACGGGCTTACAATAAGGAGGCGGTGTACAGCGACAAACTCCAGCACTACAGCACCGGAAGAGAACTCACTTTGAGACCGGATTTGTCCAACTGTCACACACCCATGGGCTGCCCGACCCTGCCAGGCTCTCCGGGGATGAAGATCTACATCGACCCCTTCACCTATGAAGATCCTAATGAAGCCGTCAGAGAATTCGCCAAGGAAATAGACGTCTCCACTGTCAAGATTGAAGAGGTTATCGGAGCAGGTGAGTTCGGGGAGGTGTATAAAGGTCGACTGAAACTGCCTGGAAAACGAGAGATCTACGTTGCCATCAAAACACTGAAAGCAGGCTATTCTGAGAAGCAGAGACGCGACTTCCTGTCCGAGGCATCGATCATGGGGCAGTTTGACCACCCCAACATCATCCGCCTGGAGGGTGTCGTCACCAAGAGCCGGCCGGTCATGATCATCACAGAATTCATGGAGAACGGCGCGCTTGACTCCTTCCTTAGGCAAAATGATGGGCAGTTCACAGTAATCCAGTTGGTGGGGATGCTGAGGGGAATTGCTGCTGGCATGAAGTACCTGTCGGAGATGAATTACGTCCACCGAGACCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTTGTGTGCAAGGTGTCGGACTTCGGCCTGTCCCGTTATCTCCAGGAAGACACTTCTGACCCCACCTACACCAGCTCACTGGGTGGAAAGATCCCTGTGAGATGGACCTCACCGGAAGCAATCGCATACAGGAAGTTCACTTCTGCTAGTGACGTCTGGAGTTACGGTATTGTCATGTGGGAGGTCATGTCTTTTGGCGAGAGGCCCTACTGGGACATGAGCAACCAAGATgtgatCAATGCTATAGAGCAGGATTACAGGCTGCCGCCCCCCATGGACTGTCCCACTGCTCTGCACCAGCTGATGCTCGACTGCTGGCAGAAAGATCGGAACGCTCGGCCGCGCTTCACGGATATCGTCAATACTCTCGACAAACTCATCCGCAACCCCACCAGCCTTAAAGCAGTCGCCAGTATACCCACTATTCCGTCCCAGCCGTTGTTGGACCGGTCTATTCCAGACTTCACCACCTTTAGTTCTGTAGAGGACTGGCTGGCCGCCGTCAAGATGTCTCAGTACAGAGACAACTTCCTCAACTCTGGCTTCACGTCCCTACAGCTGGTCACCCAGATGACTTCAGAGGACCTGTTGAGGATAGGTGTAACCCTAGCCGGCCATCAGAAGAAAATCCTCAACAGCATTCAGTCCATGCACCTGCAGATGTCCCAGTGCCAAACGGGCACAGCGCTGGCATGACTGCAGGGGGCGCCGGACGACGGGCCGGGCAGCTTGCGGAAGAATTACCAGCGGGTGAGCCCAATCCCATCGGAGCGCGCCAGAATAGAGACTATCATCCTGATCTGAGAATGTGCTTCAGGAGAGGAACCATTACCCCATATCCAACAGACCAGATCGGAACAGGACGTCGGTTAACCCGTTTGTCTCCTGGGGTTACATTTACAGGGAAAACCAAAGAAGCGGACTCTTTTTGTCCTCTTCTCATCATTAATTTTCTTTACGATGTTTATCCAGAAATCACAGTGACTGCTCAGATTTCGAGACGTCTTCGAGACGCACGATTTTCTACAAGGTTGTTTCGttcatctttttttccatttattttttttcagtataaacCTTCTACCGTCACTGCTTCCCACTTACACTACCTGTCGATCTCGGTATGGCTGACGTTGCCAAAGGACATCCTGTATGCCTGCGTCCCATCCCTAGGCCATACGAGCTAAATGAtgtatatctttaaataaatacgaGTATATCTTCAGAGTAAACCTTCATATTGAAGGTGAAGTGTAACGGACCTGTATGTAAATACCCTCTTCTTCCGCTTGCATTTTTGGCAATGTTGCGCATTGGACAAGAACCGCCGATTCTGCAGGACACAAACTCGCTTACGTCAACGCGACGCCATGAGAACAATCTGGGATGAACTCTGACTCTGTCGATGTTGTGTAAATATCAGTTAGTTGTGTATAAACTAGCGTTAAAAAGATATACTTTAGATGAAAAAAGCTACGCATTCAGGCCACTAAACAGTGTTTATTGTAGGTGTTTCCACGCTGATGAGCACTTACGTGTACAGCTTTTCTTTCTTCCACCTCTTCTTCTACTTCTTCTAGTTGTTCTTGTTAGTTTCGTGTCAGAGTGTTTGAATGCGTCGACTAGCCTTGGGAAGGTGCATTATCACCACCTAAACTAGCTAGTACACTTAAATGTAGTTCCACTGTTAATAAGCTGTACTAATGTTGGTCTTACAGGGTCTTTAAAACCGCTAATCTGTTTCCAAGCACGTGTTTACATGATAAGCCAACGGAAAGGTCACAGGCAGGAAACGAAGAGACTCGCGAAACCGCTGCCCTTCACCACTTTTATCAGGCCGAGTCACTCTCCCGGCTCCAGATGCTTCTCGATGACATTGCTAAATGCGGTACATGTTCTTTCGTGTCATCAGCTCtccatttatttgtgtgtgtgtctggattGAACATCTGTGTGACCCTTTATGAACAGATGCCTAACGCCACCCCATTGAGCACATTCTACTTAAGCAGTCAGTTAAGCACtgggtaacacacacacacaaacacacactgttgATGGCTTTGGGCTGTTCGTTTTTGGTTGCCATGGAGAAATAGAATATgctaattgataataataaataataataataataataataatacattttaaatgatttattattattaacgtaATGGacagcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtcaatgTAGTTAAGAATTGGGAGCATGCCTAATCTgtgttttgcaaatattttgtcTTCTATGATAAAATCACTTGCAGCATTGATCATTCGTAAGTTGCTTTGAATATTAAAGggttgtaaatgaataaatataaaagtaattggTAAAATGTTCCTGCTTTTGGGGTCATAATGGCTAAAAGCAGCTCCACAGGATCTCAAAGGGTTTAGCATTAAAGGACCTCAATGTAGGATTTGAAACATAATGGTTTGCAGAGGTTAGCAGCTGCACCATTCATTCACctgatgtgaatgtgtgtgtaatgaataaGATGCTACATTGCCTGTAAGTTAATGAGACTCATGGTTTATGGTTATTCTCTatgagcaacacacacacacacgcacaatcCATCACGCAGCTATACCCTAGGTGTTGCACCTAATTGGCTACAATGAATTTCACCATGGCAACCAAAGAGCGTATTGGCTCTTTGTTAAGGGTGACACACTTTTACAGCTTCTGCCAAGAGGCATATTTTTTATgcgtgcgcacacacaaacCTCAACTGTACAACATTGAAGAAACAGTGAATCTGTTCCTCCATACGACGGTAGTAGCGATAATGTCTGGCTCTATAAAAGCTTCAGCGTGAGATGAAGACGTCTTCCCCTCTGTCTCTGCGTAAAGGAAGCTCAATTAATGATCACAAGGTATCGTCGCCATGGCCCGCGTCCAGCTCGTTCGCGGCGGGGCGTAACTAAGCTGTCCGGCGTCCTACCGTATGGCCCAGCTGAAAAATGGCTGACGTGCGCTCAAAGCCGTAGATCCGCTGGGGAGGGCGGAGCATGCTGGGATACCTGCGGGTACAGCACACAGACTGAGGAGAGTGATGAATGAGCTCGAGCGAGTcagagaatgaaagagaaaacaagagcAAGGAACGGCAGAGAGTGCAGGATTGAGAAAGAAATGAGGAGAAATGAGGaacgaagaaaaaaagaaatggacagACATTAGAGATTAGAGTATTAAGTCAGCATGAAATTACAAATTGACCCTATTTTCTTTGTAACGACATGATTCTTTCAACTTCTCTCCAACCACATGAGctattctcttttcttttcacagtCCAATCATGGTGGTTAAAATTAAGTCACATCATCATATTCGGTCTCATTTGTAATTACTGCATATTGAGGTGCAAAGGGTTGAAAATGgaatttcatgttgactttcaGGTATGTGTTGTTGAGAGATGGCTTATAGTATAAGAGCGGTTGACCAATATGCGTTTTAGAAATGGAAAATGCCAATATCTAGAACAGGgtagagtgttttttttgttttgttttttactaatTCTGTGTAATATTAATCATGACTTAAACGCTTATTAAACatagaaaacaattatattgGCATCTCCATTTTATACACAAAagctcaaaagtttggggtctctaagatttgtatatttctttaaaataaatgaataccgctattcagcaagggtgcatttaaatgaccaaaagtgacagttatctataaattataaattatttatattataattatttcctttcctttgcagTTTATATAACTGTAAAGGAAAGGAAATAATTTCTAAAGAACTATAGGCaactactgaaaattcagctttgctatcacacaaataaatgcatgtaaaatatattacattaaattataataactcTTCACAAAGTAATtatcttttactgtatttttgatcatgtAAATGCAGGCTTGGGGCCAAATTTACTAAACGGCAAATTAGCATTAAAGCTTAATTCCATAAAAGCGCTGAGGGGAAAATTCTGCTAGTGATTTGCTAACAATGCgcacattaaaatatacagaCCCAGGCATACCATTTCTAAAATGACCAGCACAATCTACTAAGAGCAGTGCAAATTATCATCCACTTTAAGACATGCCCTTTTTTGGCtctaaataatgtaaatacCAGTAAAGCTGGTAGTAAACATGGCCCTTGTTGAACAAATTTTACCGACCTCAAACATTTGTCCAGTGAAAAGCTTTAGATTTTTGGAATGCAATTTCTCTTAACCAGTCATGTGTACATGCAAAATGGACAATTAATCATCCTGATCAACAtatccatcatccatctatcaCAGGGTGTCTCAGATCTTGCTGTGGAGGGCCAATGCactgcaaagtttagctccaaccctgataaaactcacctacaTGTGATCCTGATCCTGAAGACACcgattagcatgctcaggtgtgtttgattagcgTTAGAGCTAAACTCAGCAGGAAAGTGGATCGGGGCCAGATTCGAGGACCCCTGACCTATCACTGTATAAAAAACACGTGACAGTTCTTCACCATCTGCGCAGACAGGTCGAAGCTTCATTATAACGCACACCCACACAGATAGTagtatatgatttatatttgaatatgtacATGAACGCTGTTGTTTCTATTGCGAatgtgtctctctttttcttattttaaccTCTCGTTTTGCACACGTCCAACAACTCAATCGAGGATAATCTTCATCTCTTGCAAGGgtatcctcctcttcctcctcctctcggAGGGTTGAGGGAATAGGCAGGGAGTGAGAGGATGAACGGAAATGATTTGAGTCTAATTTTATCGCTCTTTGCCTGGAGTGTCGACACATTGTGGAGTCTGGTGAGCGTTTGGCAGCGGATCAGCGGCGATGCTGTTCCCGTGCCAACTGAAGTCTGAGCGGTGCATGTGTTCACTAGCACGGCTCAGACTTCACAAGCGCAAACAAAAAGCGCGTTTGGAACAAACAAAAGCGTCGTCTGACACCGCCGGTAGAAACGAGCCCGTGTTTTGTATCGTACTTTCTGCTTTTCAAACCGCACTTTCATGTTAAAGTGTAGGAGCATTACTTTAGGCAACCGAAACTAAAAGCCAGAGAGTTCGAGGGTTCGAGAGACTGTTGATATTACTAGCATGGCATGGATACTAGCTCGCTCTGTTTTGTAGATAGCGAACGAAGGAAAGCCCCCCCTCACCTCACCGAGGCTGTATAGTTAACACTCGTTTCTTGTGATGAGTATGTCAGAGTTTGAAAATGTAACTTTCTGAGAACTATTGTACTGAAATGCACTCAATAAAGACCTTGGAAAAGCTGA

Function

GO: NA

KEGG:

id description
K05110 EPHB1, ELK, NET; Eph receptor B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21389 lncRNA upstream 219326 21913520 ~ 21915028 (+) False G14484
TU21388 lncRNA upstream 219387 21913520 ~ 21914967 (+) True G14484
TU21376 lncRNA upstream 238876 21895171 ~ 21895478 (+) True G14477
TU21375 lncRNA upstream 239223 21894608 ~ 21895131 (+) True G14476
TU21373 lncRNA upstream 267515 21865738 ~ 21866839 (+) False fndc7a
TU21457 lncRNA downstream 136862 22463034 ~ 22463853 (+) False LOC122327302
TU21455 lncRNA downstream 141688 22467860 ~ 22472603 (+) True G14532
TU21458 lncRNA downstream 149609 22475781 ~ 22476202 (+) True G14535
TU21471 lncRNA downstream 185999 22512171 ~ 22513937 (+) True G14540
TU21474 lncRNA downstream 196239 22522411 ~ 22576292 (+) True G14541
XM_043263870.1 mRNA upstream 29253 22044868 ~ 22105101 (+) True gpc1b
XM_043253209.1 mRNA upstream 108267 21929297 ~ 22026087 (+) True gpc5c
XM_043253218.1 mRNA upstream 108267 21929297 ~ 22026087 (+) False gpc5c
XM_043222546.1 mRNA upstream 222685 21896676 ~ 21911669 (+) True fndc7rs1
XM_043219847.1 mRNA upstream 266955 21857212 ~ 21867399 (+) True fndc7a
XM_043222559.1 mRNA downstream 135744 22461916 ~ 22485655 (+) True LOC122327302
XM_043260236.1 mRNA downstream 189233 22515405 ~ 22549867 (+) False epb41l3b
XM_043260198.1 mRNA downstream 189404 22515576 ~ 22549867 (+) True epb41l3b
XM_043260190.1 mRNA downstream 195078 22521250 ~ 22549867 (+) False epb41l3b
XM_043260227.1 mRNA downstream 195078 22521250 ~ 22549867 (+) False epb41l3b
unassigned_transcript_253 other upstream 205535 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 272912 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 418067 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 652036 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 772646 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 365079 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1218934 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1410879 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1609749 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1757666 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile