RNA id: XM_043218601.1


Basic Information

Item Value
RNA id XM_043218601.1
length 2138
RNA type mRNA
GC content 0.45
exon number 11
gene id slc1a8b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17211876 ~ 17219198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATGAGAACCGGAGCAGCTCAAGGCCGGCATCTTCCCAGTGCCATTCCCCTCCGGTGAGCCCTTTGAGAAACATGGTGGAATATTTCAAGAACCTTATCAAGAATTCAGTATCTCCAAAGTTTCGGGAATGGCTAAAGGACTACTGCAAAAGGAACGGCTTGCTCACCTTATCAGTGTTAGCAGTGATGTCGGGTTGTGTGGTGGGATTCACGTTAAGAAGCTTGAACTTGTCAACACAGGCAAAAATCTACTTTTCTTTTCCTGGAGAACTTCTAATGAGAATGCTGAAAATGTTGATTCTTCCTCTCATCACATCCAGTTTAATGTCTGGTTTATCTGCTATGGACACCAAGGCCAGTGGACGCCTGGGCCTTCTTACGATCACATATTACCTGTGGACTACCTTCATTGCTGTAATTGTGGGGATTATTCTGGTACTGATCATTCATCCCGGAACTGGCACTGAAAAAGAGGGACATAAAGCCTCAGGAGGGCCAGTGATGACGTCTGCTGACGCTCTGCTTGATTTGATCAGGAACATGATTCCATCTAATCTGATTGAAGCCACATTTCAGCAgTATAAAACAGAACTTGTGcccaattttaaaaacagtgcaaaatCTTCACAAGCCAACTTTGTGTACATTATGCCAGACTATGAAAACCCCAAGATGGGTCACCCGGTGTTTCTTGAACTCACTCCTCCTCCTGAAATCCACTACAAGATTGTACCAGGAAAGAGCAATGGGATGAACGTGCTAGGAATCGTCATTTTCTCTGCCACTATGGGTCTTCTGCTTGGTAGAATGGGATCCAGAGGTTCGCCCCTAGTAAATGTGTGTCTTTGCATCAATGAATGTGTCATGAAGATCATCAATGCTGCTATGTGGTACTTCCCATTTGGAATCGTATTTCTGGTTGCTGGGAAGATCCTGGACATGCATGATCCTGCGGTCCTTGCGGAGAAGCTTGGGATGTATTTCATGACAGTCCTTGCGGGACTGTTTGTCCATGGTGTCATTTTACTGCCGATGTTCTTCTTCCTGTTTACAAGGAAAAACCCCTTTAGCTATATCCGCGGCCTCCTCCAGGCTCTGGTTATCGCTTTGGCGACTTCATCCAGttcagCTACTTTGCCCATTACAATGAAGTGCTTACTGGAAAACTGCCACGTGGATAGGAAAATTGCTCGGTTTGTACTTCCTGTGGGTGCTACTATTAATATGGACGGCACAGCTCTATATGAAGCAGTTGCAGCCATCTTCATTGCCCAGGTCAATGAGTATGAACTTGACTTTGGACAACTTGTTACTATTAGCATCACAGCTACAGCGGCAAGTATCGGAGCAGCTGGAATCCCTCAGGCCGGTCTCGTTACCATGGTTATCGTTCTTACCTCAGTGGGTTTGCCTCCAGATGACATCTCACTTATTGTAGCTATTGACTGGATCCTGGACCGATTTCGAACAATGATCAATGTGCTTGGAGATGCATTAGCGGCAGGAATCATGGCTCACTTGTGCAGAAAGGACTTCCAGAAGGACATCCCATCCGCAGGCAACTCAGAGAGACGAGATACCGTGATATCTTTCGGAAACCAAAGCGTGCAGAGCTTTCCCACATCAGAGGTTCCTCTTCTGGCAAACAGGGACTACATCTTAGAGGTTGTCGGCGACCAGGTGATCGAGAGGCCGACTGCCTGTTATAACCTCTGCCAAGTCTAACTTTGACGGGCGATAACAAGCAGGAGAAGAAGTTGCCTTGACTTCACAAAAACCTTTCCCCTTTTCCTCCCCATTTATGCCATTGTGTCTTTTTACATCACAGATCTTACTGTTACCCAAAGTGTCGCCTTTGGTGAACTTGAAAAACATTTGGGTGCTCCGGACACCTTAACTTGGGGGTTTTCTaaattatagatattttttaaacattcatcttCTAGAATTGCCTTAAAATGCAGTAGTTAATGACAAACCACAATGATACAATAATAAAACCACATCTAAATGGGAAATATTACGCAAATAGTAAGTCGACTGGAGTTCCAGATAGGGATCATCAGTTGCCTTGTCGTACAGTGTACGGTGACTACAAAATATGATGTGTCATGACTGTAAGAAACCGAGATGGT

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19172 lncRNA upstream 5395 17204414 ~ 17206481 (+) True G12985
TU19173 lncRNA upstream 6653 17204414 ~ 17205223 (+) False G12985
TU19169 lncRNA upstream 21269 17187117 ~ 17190607 (+) True G12982
TU19158 lncRNA upstream 48904 17161176 ~ 17162972 (+) True G12972
TU18944 lncRNA upstream 76988 17133077 ~ 17134888 (+) True G12823
TU19164 lncRNA downstream 53456 17272654 ~ 17273162 (+) True G12977
TU19186 lncRNA downstream 62062 17281260 ~ 17285830 (+) True G12995
TU19206 lncRNA downstream 166864 17386062 ~ 17387548 (+) True G13007
TU19304 lncRNA downstream 260526 17479724 ~ 17480102 (+) True G13075
TU19305 lncRNA downstream 261025 17480223 ~ 17480494 (+) True G13076
XM_043253285.1 mRNA upstream 64811 17145373 ~ 17147065 (+) True gadd45bb
XM_043253529.1 mRNA upstream 83517 17124781 ~ 17128359 (+) True rabgap1l2
XM_043255953.1 mRNA upstream 88812 17109566 ~ 17123064 (+) True fam163aa
XM_043255971.1 mRNA upstream 88812 17109566 ~ 17123064 (+) False fam163aa
XM_043255961.1 mRNA upstream 88812 17109582 ~ 17123064 (+) False fam163aa
XM_043254494.1 mRNA downstream 10682 17229880 ~ 17233863 (+) True pex19
XM_043254492.1 mRNA downstream 14860 17234058 ~ 17244433 (+) True copa
XM_043218419.1 mRNA downstream 28737 17247935 ~ 17249242 (+) True apoda.2
XM_043219449.1 mRNA downstream 34034 17253232 ~ 17259748 (+) True samd7
XM_043219458.1 mRNA downstream 34034 17253232 ~ 17259748 (+) False samd7
TU18915 other upstream 174579 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 943079 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2428899 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2429172 14776322 ~ 14782704 (+) False ackr4a
TU17573 other upstream 3032261 14175364 ~ 14179615 (+) False G11854
XR_006252905.1 other downstream 143047 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 347643 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 388054 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 560141 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 564981 17784179 ~ 17816764 (+) True G13137

Expression Profile