RNA id: XM_043218730.1


Basic Information

Item Value
RNA id XM_043218730.1
length 4732
RNA type mRNA
GC content 0.45
exon number 23
gene id lamc2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16677139 ~ 16689372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGCAGTGTGAATCACTCATGAGTAAATGAACGGTTGAGACACGGAGCTTGACGTGCCCGCGCTTGTCAGGTGGGAAGTTTTTAAATGCGCGTGCAGGGATCAGCTGTCCGTCTCAGTGAGCTGAGGACTAACGGACCCGCGGTATCCTTAATATCCTCCAGACGGTATAAAACAGAGAAGGCGGAAAATCTTACTTCTTGGATGTGGAAAATGAAGATCAGTTGGATCTTTCTTTGTGCCGTTTGCCTCTGGTCTCCAGTTCACGGAACAGTCCAATCCTCCAATGCCTGTTCATGTCATGGTAAGGCACAGTACTGCAAAGGAGATCACCTGGGACTCTACTGTATAAACTGCCAGGGAAACACTGAAGGGCGGCACTGTGAAAGCTGTAAGGAAGGGTACTACCACCAGAGGGCAGGAGACAACTGTATTCCCTGCAACTGCAACACTGCAGGTTCTGAAGGACCGGGGTGCAACAATGAGGGACGGTGTAGCTGTAAACAAGGAGTTCATGGAGACAAGTGTGACCGCTGTCGTGATGACACTCCAGTCACTGCCGGTGGATGTGAGCCTTTGAGGCTAATCTGTCGGTCGCGCAGCAGCGGTCGCCTCACATCTAATAAAGAGGAGTGCCTGCCCTGCTTTTGCAATGGCCATTCGGATGTGTGCGCCTCAGCTGAGGGATATTCCATTCTCAACATCACTTCAACTTTTGAAAATGGACCTGAAGGTTGGCGAGCCGCCACCGCTCAAGGTGTGAACCCTTCACAGGTGCAATTCAGGTGGTCTCCTACGCACAAAGACCTTGAGGTTATCTCTAAGGAGATCCTTCCTGTTTATCTGTTTGCTCCAGCATCCTTTCTGGGGAATCAGGCGTTGAGCTACGGTCAGATGCTCAGCTTCTCTCTGCGTCTGGATAGAGGTGTCCGTCGTCCTTCCATCTCTGATGTTATCCTAGAAGGAGCAGGTCTTAAGGTGTCTGCTTCATTAGGAGACTTGAGGACTGTGGTTCCCTGTGGCAAGAAAGTCACGTACACTTTCAGACTGGACGAACAGCCTGGCAGCAAATGGAAACCACAACTCTCATCCAAACAATTTCAAACACTTCTGAGCAACCTTACAGTCATTAAAATCAGGGGAACCTTTGGTGAAAATGgACGTGGATATCTGGATGATGTGTCTCTGGTGTCAGCTAAACTGGGTCCCGGCACCCCTGCCACCTGGGTGGAAAGGTGCAGATGTCCTGCTGGTTATGATGGATTATTTTGTGAACGCTGTGCCCTTGGATACAGGAGACGTTTCCCAGGCCAAGGTCCCCAAAGCCCCTGTGATCCCTGCTCCTGTCAGGGTGGAACATGTGATCCAGAAACAGgaGGCTGTTACTCAGCTGATGAGATACCAAATCTGCAGATGTGCCCTAAAGGTTATTATGTAAACCGCCAGCAGTCCAACTCCTGCCAGAAGTGTCCCTGTCCCGAGGGAGAGGCTTGCTATGTTATTCCAGGAACCCAGGAGGTGATGTGTGCTCGCTGTCCCCGGGGGACTACAGGCTCTCGTTGTGAAATCTGTGATGATGGTTTTTATGGAGATCCTCTGGGAGAGTATGGCCGTCCCAAACAGTGCCAGCCTTGCCAATGTTATGGCCATGTGGACCAGAACGCTGTTGGTAACTGCGACAGCCGAACAGGGGAGTGTAGGAAATGCTTGAATCACAGCACCGGCCCCAAGTGTGAGAACTGTGAAGATGGATACTACCACATTTACCCCACAGAGCCATGTCAGgCTTGTAACTGCAACCGACAGGGTTCTTTGTCAAATTCATGCAATGATAAAGGACAGTGCAACTGTAAGGAAGGTTACGATGGACTCAGGTGTGACAGATCAACATGTCCTTCCTGCTTTAACCCAGTTAAGAACAAGatagAGGTTTATGCAAGACAGCTGCAAGAAATGGAGGATTTATTTAATGGGTTTAAAGGCGACGGCGCTCCAGTCAGCGATGCTCAGATGGAAAGGACTGTTAGGGCCACAGAGGTCATGGTGCAAAACCTGGAGTTTAGAGCAAACGAACTCACAAATGCAGAGAAACAGCTTCAAGAAAAACTGGCGAGCATTAGCCGATCCCAGCTGAGAGAAGACAGAAAAATGGAGGCTTTGTTGACAACAGTGGATGGGATCAGAAACAAGGATGAGCAATACAGAACAGAAGTTTCAGAGATCCGTAAACTCATCAGTGAGATCAGGTTAAAACTGCAACAGGCCAAGCGGGACATCCAGCAGGCTGAGTTTCCCTCAGGTGATGCGGTACCAGGCGCTGACACCTTGTCTGATTTGGTTCAGAGAGCTGCTGATCTTGCTGAGCAGCACCAAGGTGAGGCAGTGACAGTGGAGACAACTGCAGCCAATTCCCTAGCAGAATCTGAGAAAGCCCTAGACTTCATCCGTGGTGTCATCGGCCGAGAAAATAATGTCAAAGATGAGCTCAGGGACCTCAAAAAACAGTACGAAGCAGATGTAACTAAAGTGCTTGACATGGATAGGAAGGCCATTCAAATTACTGACGCAGCTGGAAAGGAGAGTGGAGTGGCTCAGAACGCTATCAAACTGTTATCTGACCTGGAGAAGAAACTTCCAAAGCCCCTGACGGACATTATTGGTGTGGTTTCCAAGTTCGACGGTCTGAAGGGTATGGTCGATGGCAATTTATCACAGTACCAGGACTTTCAGCAATATATCCTTAAGGAGCAGATAGAGACAGACGATTTTTTCAATAAGGCCAAGAGTTTGCAGCAGGTTCAAGACAAACTTCTTGCCAGGGCAAATGCAGCTGAAGcggttaaaaataaatctctgGAAATCTTTGCCAATAACAAGGATAGTCTAGACAAGACACTAGAAACGCTCAAAGGATTTGATGACCAGATCAGTAGGAATCAGGATCTGGCAGATGCCGCTATTAAAAAACTTCCTGCCATCAACGCCACCATCCAGAAGGCCGAAGCTGACAACGTTAAGACCCAGGACATCCTGGATGCAATGTCTGCTCATTACAGAGATGCTCAGGATACTATCGACTCTCTTACAAACAATGCAACCAAACTGGAGAGAATGTCAGCTACTCTTCCTCCCTCTTGGGATATTTTGGAAGCTGCCACTAAATTGAAAAAGGATGTGGACGGACTGAAGACGGGGGCTTCTGCGACTAGAGACAAACTGAACGAAgagaaaaacaaggcaaaagCACAGATAACTGAAGCAAAGAACGCTGTCATTGAATCCACTGGGGCACTTCAAAATGCAAAGAACGCCAAGGACGCTGTTACTGATACTTTAAATACGATCACTGATATTATGAGCACACTTGttccAGGAACCTCTGGGAAAATCGACGACACACGACTGGTCGAGCTAGAGAACGCCATCACTAAAAGCCGCAGCCGCGTGGAGAAGGAGCTGAAGCCCAGACTCAGGGATCTGGAGGAGAAGGAAGCCCAGCAGAGAGCCACCATTGCAGGCATGATCAATGACATCGACACCATACTGGCTGACATTGCCAACTTAGAGGACATCCGTAAAAGCATTCCCAATGGCTGTTACAACATACCGCCCATTGAAAGGCCGTAAAGGCTTTGATTTAGTACAGGGCCAAATCACAATGTTACATAGTTTCATCTATGAACTTACTGGCACTACGTTTATTGTCATAACTAATTTTGTACTGTGTGAgaattttttagtatttatttttttcagtcgaatttttcaaaatatattactgtGAAGTTTGAAATGAGGTAAATGATATTTCTGTTTTGCGCAAGTGCCAAAGATTTTTCAAATTTGGGTGAtcaatagataaatatataccGTATCTGTAATCGATCTAGATAAGAAGCATCTTATCTTATCCGGTTGCTTCTCCATCTCCTTCGGCATCTagtgaaaaatgcacaaaaagaaatgcacaaaCTAACAATTCTCAttcttttgtgttgttttgttttattaaattcagtATCGTCATCAAGGACACTAGTTATTTTCATGGCAACATACGTTTTGAGTTTTTGAATGCTTATCGAATAGCCACTATAAAGtagaaatatattcatatgaCATTACGCAGACACACTTACACATGCTTTACACCTTAGacaactaactaaaaaaaaaattaataatatcgACGCCTAAAATTAAGATCTACAGTTTTAGCATCTTAAGAAACAGAACCTTATAATGTTGCACGgtgttttatatgtatacagtgagatttaatttaaaagcaagagggcaataaaaatacaagaaacaAACAATATCATCAACAATATCTATTTTCGTCGCTTGTGGTTTTGAATGAAGGCATGAAGGAAGCAGTGAAGATTGCTGAGCTACAGAAGCATGCCAAAACcatgaaaaaatatgtttcccactatttttttacattgagaGAAAACTGTGTCCTAGTGATCTCCGACATACTAGTTGCTATAGTGACTGctcaatgaaaatgaaaaaaataatcatgaatTTATGTTGATACAAACAGTGAGGTAtcagtgtgtgtttaataattcTCTGTATATTAGAgaagcataattaaaaaaattaaatggggGTGTTACATTAGTCTTTTAATGTATGTGACAATGAACTCAACCGACCGACCAACGCTGGGTACGACGTGTTACATAAGGAATATCTAATAAAGTTACAATTTCAGTATT

Function

GO: NA

KEGG:

id description
K06246 LAMC2; laminin, gamma 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18588 lncRNA upstream 220607 16450153 ~ 16456532 (+) False LOC122323293
TU18524 lncRNA upstream 412219 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 642231 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 642513 16032757 ~ 16034626 (+) False LOC122359940
TU18481 lncRNA upstream 798735 15878134 ~ 15878404 (+) True G12491
TU18628 lncRNA downstream 1554 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 42365 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 43849 16733221 ~ 16776351 (+) False LOC122361622
TU18740 lncRNA downstream 45433 16734805 ~ 16776351 (+) False LOC122361622
TU18737 lncRNA downstream 47002 16736374 ~ 16776351 (+) False LOC122361622
XM_043264338.1 mRNA upstream 6810 16625845 ~ 16670329 (+) True lamc1
XM_043219821.1 mRNA upstream 54106 16613776 ~ 16623033 (+) True dhx9
XM_043259164.1 mRNA upstream 64673 16561384 ~ 16612466 (+) True rasal2
XM_043258692.1 mRNA downstream 11705 16701077 ~ 16718102 (+) True smg7
XM_043258700.1 mRNA downstream 11705 16701077 ~ 16718102 (+) False smg7
XM_043258710.1 mRNA downstream 11706 16701078 ~ 16718102 (+) False smg7
XM_043262423.1 mRNA downstream 32756 16722128 ~ 16723558 (+) True LOC122361612
XM_043262502.1 mRNA downstream 35242 16724614 ~ 16776347 (+) False LOC122361622
TU18526 other upstream 408342 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1894162 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1894435 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2497524 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 342947 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 672873 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 877469 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 917880 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1089967 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile