RNA id: XM_043218854.1


Basic Information

Item Value
RNA id XM_043218854.1
length 1451
RNA type mRNA
GC content 0.36
exon number 13
gene id slc35d1b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6474022 ~ 6488700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTGGACCTATTTACCACGTAAACCGCTCGTATCTCGGTAGACATGGCGGACATACGAAAACGTCTCTGTGTGAGATTTACTAAGAATAACCTAAAAGATAATATTTCCGGAGAAAGCAGTACTGGCACATCTGTACTACTTGTTAAGTTATTTGCTGCAGCTTTCTATGGACTCTCTTCTTTCCTTATTGTTGTCGTTAACAAGAGTGTTCTTACTAACTACAGATTCCCGTCTTCTTTAGCAGTGGGAATTGGACAAATGTTTGCAACGATTGTTGTGCTACGAGGAGCAAAATCATTAAAAGTGGTACATTTCCCAGATTTTGATAGTCGTGTACCCAATAAGGTATGGCCACTACCTTTAGTGTATGTGGGAAATCAGTTAACAGGCCTGTTTGGAACAAAACAACTGAATCTGCCAATGTTTACTGTGCTCAGAAGATTCTCCATTTTATTCACAATGCTATTTGAGGGTTACCTCTTAAAAAAGGAGTTTTCATGGTCCATAAAGGGAACCGTATTCACTATGATCCTGGGAGCTTTTATTGCTGCAAGTACAGATTTATCTTTTGACCTCCATGGATATGTGTTCATTACACTTAACAACATTCTGACTGCGGCTAATGGGACatacatgaaacaaaaactgGACTCCAAGGAACTGGGAAAATATGGGCTGCTGTATTACAATGCTCTATTCATGATTATTCCCACTATGATTTTAGCATACTTTACTGGAGACGTTAAAAAAGCTTTGGAGTATGATGGTTGGgctgatattttatttgtgattcAGTTTGTGTTATCAAGTGTCATGGGGTTTATACTCATGTACTCAATTATGTTATGCACCCATCGTAACTCTGCTTTGACGACAACCATTGTCGGCTGCATCAAGAATATCTTAGTGACATACATCGGGATGGTATTTGGTGGAGATTACATCTTTACGTGGGTGAATTTTATCGGCCTAAACATCAGCATTGCTGGCAGTCTTGTGTACTCATACATCACTTTCACTAAGGAACAAAAAAaaaaatgatgtttaaacaAGACAAAGTCAGTCAAGAACCCAGTCTCATTCTGCACCAGTGATCAGCAATTGTCCCAGCAGTCTtggttttgttattttgtatgaaCCAATTCCTATGCCAGGGAAACAGTGACAtactgaatattattttaatcttttctgatattatttaattaaatgttgatAGATGAGAAGTGATTTCCTTTGCTGTGGTATGAAATAAATACTATCCTTTTGTCTTACTAAGTAGTAAATTCCTCAGCTTAATTAAAGGTGGactgttcagtttctttttttaatttgagggATAAGtaaatctaatttttaaatttatttttcttttatttttgtggttaATTAACATAATGGATATGAATTACAACTGTTGAGCCTGAAATAAACAAGTGCATGACATGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14570 lncRNA upstream 97426 6376143 ~ 6376597 (+) True G9758
TU14477 lncRNA upstream 331158 6142042 ~ 6142865 (+) True G9697
TU14472 lncRNA upstream 614071 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 641333 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 642908 5770058 ~ 5831115 (+) True G9667
TU14665 lncRNA downstream 13690 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 23464 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 34105 6522805 ~ 6523467 (+) True G9834
TU14676 lncRNA downstream 35420 6524120 ~ 6524421 (+) True G9836
TU14677 lncRNA downstream 36082 6524782 ~ 6525095 (+) True G9837
XM_043219129.1 mRNA upstream 106069 6367192 ~ 6367954 (+) False sst2
XM_043217069.1 mRNA upstream 136451 6257551 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 351926 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 367544 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 367551 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 367554 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 367563 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 106069 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 251504 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 253523 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 360316 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 364376 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14734 other downstream 201672 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 202968 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 497598 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 1016891 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1618165 8106865 ~ 8107777 (+) True G10212

Expression Profile