RNA id: XM_043218997.1


Basic Information

Item Value
RNA id XM_043218997.1
length 1397
RNA type mRNA
GC content 0.45
exon number 5
gene id selenop2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12658046 ~ 12660442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTATCACACCAGGCCCCGATCCCATCTTTTACtggtttgttctgtttgtttaggGGGAGGTTTGTCCAGATTGTGAGCTTTAAAAGTGTGGACCAGACAACTTACCctcattatttttaacacagAGGAGGCCAAGGGTCGTAGCTTGAGcTGTTGCGGTGGGTGAAGTTCAGCGGACGTGATGCAGGCTCTCTGGGCTCTGTGGTTGTCTGCTTTTCCAGCTCTGCTGGGAGCTTCATCGCTGATTGTGGAGAAGGAAAGCACTGGCTCCCGGATTTGTAAGCCTGCTCCGAAGTGGGAGATCGAGGACGAGGTTCCAATGAAGGACCTGCTAGGAAATGTAGTCGTTGTGGCTCTTCTTAAAGCGAGCTGACAGTTCTGTCTCACGCAGGCCGCCAGgtTGGGAGACCTGCGTGACAAGCTGGCGCGTGGCAAGCTGACTAACATATCATTCCTGGTCGTCAATGAGCAGGATGCGCAGTCCAGAGCCATGTACTGGGAGCTGAAGAGACGGACAGCAGAGGGCATCCCTGTGTATCAGCAGAGCCCACTGCAAAATGACGTCTGGGACATCCTAGATGGAGACAAGGATGATTTCTTAGTTTATGACAGATGTGGACATCTCACCTTCCACATTGTCCTGCCCTATAGCTTCCTTCACTACCCTTATGTAGAAGCTGCCATCAGGGCTACGTACCACAAAAACATATGCAACTGCTCATTGCATGCAAACTCCTCCATATCAGAAGGCTtcgaaaacaacaaaaatgacgCAAAGGAGCTTACAGAAGAGAACCGGAAGACTAACAATACAGAGCCCGTAACTGTTGAGCACCATCACCATCAACCTGagcgtcatcatcatcatcatcatcatgtgcatcatcatcatcatcattaccataaaaataaaacgaacaGCACCGGTGATTCAGATGTGACCAGCATTTCAAAGGAGCCAGTACAGCATTCGCATCAAGAACATAGTCATCACTAAAATTTGGGtcttcttgtttgttttgtttctcgataattgttgtattttagtttataaatgTACTCTCTTTTATCTATACGCAGCTGCTCTTGTGTCAGACCTTATATTGACCTTTAAGGAGGAATTCAGTTGGTTCTCATTGCTCTTAATGAAGTGTGCACTTTAAACCTGAGTCAGGGGTCTGCATGCAGATGTTGAGCGGAAAAATCATTTGCACGAGGCTTTTGAATTCCTCCTTACTTTTAGGGATTATATGTTTGCTGAACGAAAGAGTTTgctatttgtattatttgttgaCTTGTATTTATGCGATGGTATGATGTGTTAAGGAAGTATGTTTATGACCCAAAGTGGTATGAAAGaaagtgtatttaatatacagCATTTAATATACAGAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008430 selenium binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252588.1 lncRNA upstream 33094 12623829 ~ 12624952 (+) False LOC122358236
TU17180 lncRNA upstream 36632 12615995 ~ 12621414 (+) True G11595
TU17178 lncRNA upstream 43450 12614375 ~ 12614596 (+) True G11593
TU17175 lncRNA upstream 112454 12545353 ~ 12545592 (+) True G11590
TU17037 lncRNA upstream 318997 12337667 ~ 12339049 (+) True G11505
TU17208 lncRNA downstream 36644 12697086 ~ 12697294 (+) True G11618
TU17212 lncRNA downstream 85370 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA downstream 85370 12745812 ~ 12759891 (+) False G11622
XR_006253165.1 lncRNA downstream 148630 12809072 ~ 12813327 (+) True LOC122362827
TU17386 lncRNA downstream 654787 13315229 ~ 13466961 (+) False G11740
XM_043258015.1 mRNA upstream 1162 12653878 ~ 12656884 (+) True si:ch73-382f3.1
XM_043257989.1 mRNA upstream 7636 12630031 ~ 12650410 (+) True tesk2
XM_043223600.1 mRNA upstream 116473 12488213 ~ 12541573 (+) True cdh7a
XM_043217968.1 mRNA upstream 277436 12376957 ~ 12380610 (+) True impa1
XM_043260504.1 mRNA upstream 281310 12364627 ~ 12376736 (+) False asph
XM_043219017.1 mRNA downstream 473 12660915 ~ 12664376 (+) True elovl8a
XM_043219008.1 mRNA downstream 473 12660915 ~ 12664376 (+) False elovl8a
XM_043263907.1 mRNA downstream 39490 12699932 ~ 12739838 (+) True zswim5
XM_043264411.1 mRNA downstream 124686 12785128 ~ 12790107 (+) False tmem68
XM_043264420.1 mRNA downstream 124708 12785150 ~ 12790107 (+) True tmem68
TU17183 other upstream 31659 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 376542 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 377387 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 378032 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 720456 11908073 ~ 11937590 (+) False pld1a
TU17265 other downstream 207541 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 207541 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1514922 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1514922 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 2115880 14776322 ~ 14782977 (+) False ackr4a

Expression Profile