RNA id: XM_043219030.1


Basic Information

Item Value
RNA id XM_043219030.1
length 1888
RNA type mRNA
GC content 0.46
exon number 7
gene id mbd3a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23005897 ~ 23016480 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGACTCGTGAATCAGAAGGTCGCGAGGTGAGAGGATAGAGCAGCGCCAGCGGCCGCCTTTAACCCTAAACATTCACAGCTTTTCCTCCAGAGAGACTCCGGGAGAAACATGGAGAGGAAAAGGTGGGAGTGCTCGGCTCTCCCAAATGGTTGGAAAAGGGAAGAAGTGACCAGAAAGTCGGGCTTGTCCGCGGGGAAAAGTGATGTCTATTATTTTAGTCCAACAGGGAAGAAGTTTCGGAGTAAACCGCAGCTGGCCCGATATCTGGGAAACTCCATGGATCTCAGCTCCTTTGATTTCCGCACAGGGAAGATGCTAATGAGcaagctgaataaaaacaggCAGCGGATCCGCTACGATCACAGTCAGAGCAAGGGTAAACCTGATCTGAACACGTCACTGCCGGTCCGACAGACGGCGTCCATCTTCAAGCAGCCTGTCACCAAGGTCACGAATCACCCCAGCAACAAGGTCAAGACGGACCCTCAGAAAGCTGTGGACCAGCCCAGACAGCTGTTTTGGGAGAAAAAGCTGAGCGGACTCAACACTTACGACATCGCAGAGGAGCTGGTGAAGACCATGGATCTCCCGAAAGGATTGCAAGGTGTGGGCCCGGGGTACACGGATAAGACGCTGCTCTCGGCTCTAGCGAGCGCCCTTCACACCAGCTCGGCTCCCATCAGCGGTCAGCTGTCCGCCGCCGTGGAGAAGAACCCCGGGGTCTGGCTCAACACCACACAGCCTCTGTGCAAAGCCTTCATGGTGACGGACGAAGACATCAGGAAGCAGGAAGATCTGGTGTACAGCGTGAGGAAGAGGCTGGAGGAAGCGCTCATGGCGGACATGCTCGCACACATAGAAGAAGCTACCATCGAGGCCAAAGCTCTGAAGGAAGAGTCCAACGACGAGGAAACGGAATCCCTATAGCTgaaaGCGGTGGTGATGTTAAAGACCCGGACCACAGTATATTTCTCCCCAAACCCAAAGACGCACTCAGACTCGGACGTGAGCTGATTCTATGCAGAAACCAGCCGCTCTCCTGCCTTTCTCCTCCAGCTGTGTTTTAACGTAACATTTCAagcaattttataaaatcaaattcACTTTTTCTCCCCTACCTTTAACCGGTTTGTAGTggattttctctatttttgtaCAGCACGAGCTTCAAGTTCTGGGTTTGGTTTTTGCAGCATAACGCAGTCTGAGTGACTTACAGACGCcgaggttttattttttattcagatatCTTAAGCTAATCTCAAATCATGaacgtttttggttttttttttttacacaaatgaaatcccatgttttttatgattatggAAATAACGCACACTTAGTGCATACTGGTTTCGATGGCTGGTGCTCAGTTCTTTTGTTACTGTGCTGTTTAAGCTCTTACGATGGTGCTTAGGGTTTTGTATTCATGAATTAGTCGATGCATAGCTGATATTCATTAAGAAATGGACAGTTTATCAATATTTCTGGAGTCATTTTTCAGTTCTTTTTGTGAAGCTGGTATGTTAGTCATCCTTCACCGATGCAGtgtggtttattattattattattattattattattgttgttattatggACTGAATGGTTACAGTACAGAAATCTGTGTGATGCATCAGTGTTTGTTCACTAGACGGCTTGTTTTTACACTAATTCTTCCCACACCCATGATTGAATATAATACATCGActcatttctttcttccttcaCAAGCATTGTACAGTCATATTTGAAATATGCAGGAGAGGTGTTTTCGTATGTTGCCCTTTATTTGCAAGAGCGTGGATcactttttgaaaatgcaaaccTTGTAGCTGAAGGACACGTAATTTTATAAACTGggaaaataaaagtctttcaaCACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11591 MBD3; methyl-CpG-binding domain protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21584 lncRNA upstream 789 23003204 ~ 23005138 (+) False LOC122324535
TU21569 lncRNA upstream 126462 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA upstream 126462 22860184 ~ 22879465 (+) False G14589
TU21556 lncRNA upstream 176382 22813266 ~ 22829545 (+) True LOC122328317
TU21587 lncRNA downstream 10300 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 12687 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 30153 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 141618 23158098 ~ 23179131 (+) True G14772
TU21843 lncRNA downstream 162965 23179445 ~ 23179755 (+) True G14778
XM_043219049.1 mRNA upstream 673 23003165 ~ 23005254 (+) True LOC122324535
XM_043264274.1 mRNA upstream 7411 22958987 ~ 22998516 (+) False tcf3a
XM_043220303.1 mRNA downstream 1877 23018357 ~ 23025395 (+) True LOC122325295
XM_043222658.1 mRNA downstream 233712 23250192 ~ 23260474 (+) True LOC122327352
XM_043222059.1 mRNA downstream 408214 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043253712.1 mRNA downstream 514290 23530770 ~ 23533357 (+) True scg2b
XM_043252984.1 mRNA downstream 547284 23563764 ~ 23624866 (+) False mbnl1
TU21525 other upstream 310597 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1077108 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1144485 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1289640 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1523609 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 528626 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 720571 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 919441 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1067358 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1476958 24493438 ~ 24499685 (+) True G15065

Expression Profile