RNA id: XM_043219111.1


Basic Information

Item Value
RNA id XM_043219111.1
length 6118
RNA type mRNA
GC content 0.48
exon number 20
gene id camsap2b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21754405 ~ 21793590 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttttttccAGGCCAGTGCGGCAGGCGGACCGCAGGGAGAGCGAGAGATTTTTAGGAAGGACAGTTACAAAAGTTAAAGAAGACGAGAAATCATGACACGGAACAGCGAACTCGTCGATCGCCTCTCCTCGCCCCTCAGCTTGACATCGCTCATCACGGCGCTCGTGTCACCTATGAAATACTGATTTTTGCCATCCACACCAACTTGAGGATATAATGCCGGGAAATGGATGAGAACTACCGCAGTCGCCTGGAATTGCTTGTTGGATATTGAATCTGGCGCTCGGGGATGCGGTCGGGTTTGTTTTCCCtctatataattaatatatgagAGCAGAGATCTTGGGCCAGTCCGTTATTTTTCACATCGCCGCTCTGATCTCATAGTTCCGCGGGACGCGATGCATCGACCCGCTCTGTGTTTTACTTTCATGCTTTTTTATATTGCGTTTTTATGTACAGCACTTTGGTTCCACTTCGGGGTGTTGAAAgtgcttttgaaataaaactgagTCTGGAGTAGATGTCAAGATGGGTGATGCCGCAGAGATCAAGGAGAGCAGGAGGACGTTCATCGTGCCCGCGATCAAATCTGTTGATCACTACGACTTCGCCAGGGCCAAGATATCGTGCAGTTTGACGTGGCTCATCGCCAAAGCCTTTGGATCTGACTGTGTACCGGTGGATTTGGAGGACCCATTCTACAGAGACCAGTATGATCAGGAGCATGTGAAGCCGCCCGTTGTGTCTCTGCTGCTTTCCGCGGAGTTGTATTGCCGTGCTGGGAGTCTGATCCTCAGGAGCGATGCGGCTAAACCTCTGCTGGGTCACAACGCCGTCATCCAGGCCCTCGCTCAGAAAGGCCTCTACGTCACTGACCAGGAGAGACTCGTGACTGAGAGAGACCTCTGCAAGACCCCTATACAGATGAGTTCCCACTTGGCGATGATTGACACTTTAATGATGGCGTACACAGTTGAAATGGTCAGTGTGGAGAGAGTGATGACCTGCATACAGAAATTTACTCCTTTCCTTCCTGAGGAAGACTTCCCTTATGATGCTGAAGAGGCCGTGATATCATGGATCAACAAGGTAAATGAACATCTTAGAGAACTTTTGGCCCAAGAACCAAGAGATATAGGAGAACCCTGCGTGGTTCAAAAGGGGCGGTACAGGAGAGAGGACTCAAAAGCACGTCCggttctttctctccctctggtGGACAATCTCTTGAAGGACAACACAGACGGCTGCGCGCTGGCTGCACTACTGCACTTCTACTGTCCTGATGCTGTGCTACTGGAAGATATCTGCGTCAAAGAAACAATGTCATTGGCTGACAGTCTGTACAATCTCCAGCTGATCCAGGAGTTCTGCAGAGAAAACCTCAACAACTGCTGTCACTTCACCCTGGAGGATATGCTATATGCCTCCACCACCATTAAGagtAACTACCTTGTGTTTATGGCTGAGTTATTCTGGTGGTGTGAAGTTGTGAAACCATCTTTTGTTCAGCCTCGAACACTCAATACCAAAGCATCTGATCCATCGCAGTCTAATAAAATGGCTCCAATAACCAAACAAAACCTGATCCACAGACCAGGCAGTCCAGACCAGTCTAGGTCACAACCTAAAAATGACAGCTCAGCAGTTATCAGGCGGTCATCCTCCATGTCGTATGTGGATGGATGTGTGGGGACATGGCCTAAAGAGAAACGGTCTTCAGCTCATGGGATATCATTTGAGATTCCACTTGACGACAGCATGAGTTCATCTTCAGGACGTGGACTGAGTCGATCGGCGAGCACTGAAGGATTGGGTTTTAAAGTTCATCACGCGGCCCGAGGCATGCGAAGGAACCTCTCGTTCCAGCCCGTTAACGGAAATGCCCACAGCAAAATACGtgaggaggatgatgaggaaTCCAACAGACAGATCAGCAGACATCGACTGGGAAACTATGCTGGGTACTCAAATGGTGTATCGGCAGATAACCCAAGCCCTCCGTATGACCCTCAGCCCAACACCCCCAGTATAGAAGAAGCCCTGAAGATCATCCATGACTCTGAGCGACCCCACAGCAGCTTGCAGCCCCCATCTGGGGACAGCGCCTTTTTCCTACACAACCCATCTTCCCACAACTCCCAATCTGACACAAACGATCCAGAGGACTCGCTTTCCAAGGCCAGAGCAGCGGAAGACGCGGACCTAAATTCCACCTCTACTGACATGGACACCGGAATCCATGTCCGTACAGAGGATATCCAGGACGGACAGGATGAGGACTCATCCCTGAAGGACTATTCAGACATGGACCAAGACTACGAAGCTCGTTCCTGTCCACTTCCCGAGACAACAGGCAGCCCGTGCCCAAGCCTTTTGGAAACGCGCTCCCTGGCCACCAGCATGGCCTCCTCACTGGGTTCGGCTGTTCGCATGACCAGCTTTGCTGAGCAGAAATTCCGTAAACTAAACCACGGCGATGGCCGCAGCAGCGGGAGCGGCGGTAACACGCCTGAGAGCGGCGACGTAAACGTCCCATCCCCAGGAGCAACCGGGACAGTCCGTTCAATTACTCCTGATGCACGCACTCCCTCTCGAGTCACCTCCCCTCGTGACCCCTCACACCTGTTGGCGTCAGAGATGGTGCAGTTGAAGATGAAGCTGGAAGAGAAACGCAGAGCCATTGAggcacaaaagaagaaagttgAAGCAGCTTTTACGCGTCACAGGCAGCGCATGGGCAGGACTGCCTTCCTTAACGTGGTCAGGCGTAAAGGAGTCGTGTCACCACTAGGGGGCGACAATGAAGTCCCAGGCGGTAGGGAAAAACAAACCAGCTACCCACAACCCCTAAAAACCCCTTTAAATTCCAATGACCCAGATTCTAGACTTGAAAGATGTCGACCAGACGGCGCACCGCCGAAATCGCCTCTGGAGGAAGCAGCCGTGGAAGTGGACATGGCGGAGTATACGCGATCAATCGAGCGCCTGAACACGTCTCTGAGCTTCCTGCAGACGGAGATGCAGCGCTTGGCGCAGCAGCAGGAACGCATCATGCAGATGCGCGAACACCAAAGTTGGGTGATTTCTCCACCGGATCCGTCGCCACGCAAACATTTGCGTGAACTACGCAGCAGCAGCGTAGTTGGTCGAGGTTCGGTGGGGTCGCTCTCCCCAATTTTATCGTCTACTGGTTCACCTCGCACGACTCACCGCTCGCCCTCTACCATCAAAAGGAAATCTGCATCATTCCATGCAAGGACGCCGAGAACACCAAGACCCAATGATCTGAAGGTTACCCCGTTTAGCCGCATGCTCAACACGCCACAGTCAGTGGACAGCCTGCCTCGACTTAGACGCGTTTTGCCGAGTCAGTCACAATCCAGCTCATTCGCCTATTTAGGGCATGATGAGCGACCTTCAAACGAGGACCACACAGCTAGAGAAAAGCCATGTAAGCAAGAGCCCAAAGACGCacaaaaagctgctgcaaattCGCCATCCGCTCAGGTGAATgaaaagcagaaagaaaaacaggatGTCGGAAAGAGTGACAAAACCATGAGTGGGACAACATCTGAAATTCTGTCTCAACCAATAATGGACCATTCGACGGTAATGGCCAGTGGACACACAGATGAAGAAGAGTTGCATGAGAAGAAGGATCTGATTGAGGTTCCTCTCTCTGTTCTGAAGCCTCTGGATGGGCATGATCTGGAGAGCAGCAGAGAAACAGGGACTGGACCAGAATCTGGACCAGATCAGAAGATGTGCTGTGGTTTCTTCTATAGGGATGACCTGAAGGCAGAGGAGGATATTGCACAGAAGAAAGCAGCTCTGCTGGAAAAAAGGCTACGGCGGGAGAAAGAGATGCAGATCAAGAAACAGCAACAGGAGGCTGAGATAGAACAAAAGAAGGAAGCAGCACGGTTGAAAACGGAAGAGGAACGTCAGAAGAAGGAAGAGGAGAAGGCCAGACGGgagttcattaaaaatgaatatttgagGAGGAAGCAGCTCAAACTGATGGAGGACATGGACAGTGTTATTAAGCCACGCCCCCCTAGTGTCAAGCAGAAGAAGCCACGCCCCAAATCTATGCACAGAGACATCATGGAGTCTCCAAAACCTCCAGCACGGACAACCACAGGGTCACGACCTCGTGGATATTCTGTGTCCAGTTTATCACTCGCCTCTCTTAATTTGGCAGACACTGAGAGTGTCCAATCAGATAAGAGGACATCCAGAGGCAGCAGACTGTCTCCTGGCAGTCTGTGTTTCTTTCTGAGCTCCCCTAAAGGGAGAAAGGGAAGGCCAGAGTCCACTGAGGGCTTTCTGTCACCGTGTCCATCTGTAAGTGGAAACGGGGAGAACTGGGAGATTGAATCAACAACATCATCCGCAGCGTCTAACGCAGAATACACAGGGCCAAAGTTGTACAAGGAGCCCAGTGCTAAATCGAATAAATACATAATCCAGAATGCTCTGGCTCACTGCTGCCTCGCGGGCCGTGTCAACGAGGGACAGAAGAACAAAATCCTGGAGgAAATGGAGAAAACCGAAGCCAACAACTTCCTGATTCTGTTCAGAGACTCTGGCTGCCAGTTTCGCTCTCTTTACACGTATTACCCAGAGGCGGAGGAGATCAACAAGCTGGCTGGCATCGGGCCCAAGACCATCACACCCAAAATGATCGAAAACCTTTACAAATACAGCTCGGacaagaaactgttcagcaaaATCCCCGCCAAGACCATGTCAGCTAGCGTGGACGCCATCACCATCTACAGCCACCTCTGGCAGAACAAGAAGCAAAACACGCCCAAAAAACTCCTCAAATAAGTTCACAGCTCACGATCAGACATTATGATGCACATCCtgaatgtaaagaaaacacGTGCGGGCTTTGGATGTTCATTTGTGGCGAATTTGAAACTTTTCGTTCTACAGTATGCGCGCACACactcgtgtgtgtttgtttgcagcaCTGACGGATGCGCTTTTaagtcgttttttttatttgaaacgtTCGATTTTGTGGCCTTATGCTTGTCTTGTTGTGTCTTTTATGCAATGCTTAACGCACAGCTAATGAGTTTATGAGCAAGTCGTTGCGTCGTATGAAGATACGCGGTCTGCTTCTTTTGTGTTCGTGGAAATGCAGGTGTAAAAATATTAGGGACACGCTACACTTGAAGACTAACTTTACAGATGGCCATGCGGTTGAAGAAGCATCTAATGTACTGGAACCTCaagttttttgctttatttaatgtctGCGTTATTATGTTTTGGGTGGGTTTCGTAATAATTGTTGCGAAAACCGCTACTCCGGAGGAACGTGTGTAAAATTAGCTACAATAAGAATTGTTCGCTCAAGACTCTGTTACTCTGTATGTGACGTAAACGTAATGATGGGGCCTTTAACTGATGAAGTTGAGGACCAAAACTAAACATATTAgctagaattaaaaaaaaaatacattcctAGGTATGTTCCTGTCACTAGTGTCACGATCCAGAATATCTGGGTGCCATGTATGTttgaaacatacattttatagagACAGATCAGTTTAGCTGACTGTTTGAGTAAATTTCCATAAAAACTATACAGAGGAAACACTGAGTTGAATATCATATTATGAAGCTTTCAAAGAGATGGTGCATATTATTGCTAAATCATGTGGTAACTCGTTTTTAATTATGAAGTGCATTTTAAAGAGCTGGGATTATTTGGGCAGGCTGTCGTCTGGTAACACATTTTGTCTTCAGGTGCAAAAGAATCGAaagatatttgttatttttactaaGTGAAGTAAATCATCGTTTGAATTTATTGATGCTGTACAGATAATAGTTTTACATACTAAGCATATTTTTTAAGCCATTAAATATTACTGATATTTTTCATATGAAAAAGATGACGTTTAACAGGTGCAAGTACGATGGGATGTGATAAGAGCAGAAGTTAGCGCTTCTGAGAGACGTTCATTTCCACACGCTGTCTAATCTTTTTCCAGGTCATGTCCGCTGTTCGTTCATCATATGCTTTGTCTGTTTGTATTTGAATGTTAACCTCAACATAAATACAGATTTACAACCAAAACCTTA

Function

GO: NA

KEGG:

id description
K17493 CAMSAP; calmodulin-regulated spectrin-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21153 lncRNA upstream 33830 21719918 ~ 21720575 (+) True G14316
TU21152 lncRNA upstream 36413 21716771 ~ 21717992 (+) True G14315
TU21083 lncRNA upstream 133308 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA upstream 197007 21556844 ~ 21557398 (+) True G14285
TU21010 lncRNA upstream 383906 21365808 ~ 21370499 (+) True G14212
XR_006252672.1 lncRNA downstream 17339 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 55617 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 58314 21851904 ~ 21852835 (+) False LOC122327294
TU21373 lncRNA downstream 72148 21865738 ~ 21866839 (+) False fndc7a
TU21375 lncRNA downstream 101018 21894608 ~ 21895131 (+) True G14476
XM_043224622.1 mRNA upstream 38115 21714683 ~ 21716290 (+) True ccl20a.3
XM_043254267.1 mRNA upstream 49511 21702091 ~ 21704894 (+) True LOC122355713
XM_043254274.1 mRNA upstream 49511 21702094 ~ 21704894 (+) False LOC122355713
XM_043223836.1 mRNA upstream 66834 21682031 ~ 21687571 (+) True LOC122328123
XM_043223839.1 mRNA upstream 66834 21682031 ~ 21687571 (+) False LOC122328123
XM_043259016.1 mRNA downstream 1098 21794688 ~ 21809332 (+) False wdr47a
XM_043259036.1 mRNA downstream 1335 21794925 ~ 21809332 (+) True wdr47a
XM_043259027.1 mRNA downstream 1335 21794925 ~ 21809332 (+) False wdr47a
XM_043259049.1 mRNA downstream 21610 21815200 ~ 21819162 (+) True LOC122358999
XM_043259004.1 mRNA downstream 25292 21818882 ~ 21827232 (+) True nlrp1
TU21151 other upstream 38118 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 272087 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 392697 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 392697 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 392697 21337682 ~ 21361708 (+) False G14211
TU21370 other downstream 67301 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 135157 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 897661 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1751516 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1943461 23737051 ~ 23737122 (+) True trnaw-cca_1

Expression Profile