RNA id: XM_043219140.1


Basic Information

Item Value
RNA id XM_043219140.1
length 1455
RNA type mRNA
GC content 0.51
exon number 8
gene id sf3a2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22780823 ~ 22784846 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGGAATTAGTTTACTTTAGCACACTTGTAAGCACACTTTTGTCAATAAAGTTGCGCACTTCAAAACAACAGGAACCGGAAGTGCATCGCTAGGCGCGCACGCGCATTGAGGTAGCGGCGGCAGCAAGCGTGATCAGGACGTTagGAGTGTGAGGAGAGGAACCTGTCGTCATGGATTTCCAGCACCGAGCTGGAGGGAAGACGGGCAGCGGCGGAGTCGCCTCGGCGTCCGAAAGCAACCGGGACCGGCGCGAGCGTCTCCGGCAGCTGGCCCTGGAGACCATAGACATCAACAAAGATCCCTACTTCATGAAAAACCACCTGGGCTCCTACGAGTGTAAACTGTGTCTCACGCTGCACAACAACGAGGGAAGCTATCTCGCTCACACGCAGGGAAAAAAGCACCAGACTAACCTAGCGAGGCGAGCCGCCAAAGAGGCGAAGGAAGCGCCGGCTCAACCCGCTCCAGAGAAGGTCAAGGTTGAGGTGAAGAAGTTTGTCAAGATCGGCAGACCCGGGTATAAAGTAACAAAACAGAGGGATCCCGAGTGCGGTCAGCAGAGTCTGCTTTTCCAGATTGACTACCCAGAGATAGCGGAAGGTATCGGGCCGAGGCACCGCTTCATGTCGGCGTACGAGCAGAGAATCGAACCTCCGGACCGTCGCTGGCAGTATCTGCTGTTCGCGGCCGAGCCCTACGAAACCATCGCGTTCAAGGTTCCCAGTCGAGAGATCGACAAAGCAGAGACTCGTTTCTGGACACACTGGAACAGAGAAACCAAACAATTTTTCCTGCAGTTCCACTTCAAGATGGAGAAGTCTCTGGCCGCTCCGCCGGGTCAGACGGTGTCTGTGGGAGTCAAGCGTCCTCCTTCGCTCATCACCGGACTCGGGCATCCTCACGGTGACTCCATGCCGGCGCCGCCGCCGGGAGGAATACACGGGATGCCGCCCGGGGCCCCCATGCCGCCCCAGATGCCCCCACAGATGCCTCCTCCGGGCGCCCTGCCTCCTCACCTGAGGCCTCCGCTCCCCGGCGACGGCTAGCCGAAGGGTCGAAGCTTTTATAGATGATGCATTGTTAAAGCATTTGAATGCATTCACTTAGGCATCTTATAATGCCTTTATACGACCTCATGAACAGTTGTAACCAAAGTTATAATACTTTTTAGTACAACTTTAGAAAACACAAACCATGCATTTTAACTTTGGTCGCAGttgtttatgaaaatatttttgtcatgcGTTATACATAAAGGCTTCAAGTGTTAACTTTCTAGACACAAATCAAcatgtttatttcctttttcttgAACACGGCCCTCTGAATATGTAGTGATTTGACAGTGGTGTGAATTTTCATTGATGGCAAGAGAACGGATTGTGTACCACAATgtccaaatgttatttttatgctttttttattattaaaaacatctttaacgTTGACACGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12826 SF3A2, SAP62; splicing factor 3A subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21492 lncRNA upstream 3820 22776240 ~ 22777003 (+) True G14553
TU21520 lncRNA upstream 110029 22633529 ~ 22670794 (+) False LOC122327931
TU21518 lncRNA upstream 110029 22643403 ~ 22670794 (+) False LOC122327931
TU21485 lncRNA upstream 129980 22643795 ~ 22650843 (+) True G14549
TU21473 lncRNA upstream 194573 22574923 ~ 22586250 (+) False G14541
XR_006252487.1 lncRNA downstream 1875 22786721 ~ 22802473 (+) True LOC122357472
TU21556 lncRNA downstream 28420 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA downstream 28569 22813415 ~ 22829492 (+) False LOC122328317
TU21569 lncRNA downstream 63067 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA downstream 75338 22860184 ~ 22879465 (+) False G14589
XM_043220650.1 mRNA upstream 7067 22770549 ~ 22773756 (+) True tpgs1
XM_043224502.1 mRNA upstream 23150 22752753 ~ 22757673 (+) True si:dkeyp-68b7.5
XM_043224512.1 mRNA upstream 23150 22752756 ~ 22757673 (+) False si:dkeyp-68b7.5
XM_043216708.1 mRNA upstream 29293 22730674 ~ 22751530 (+) False si:dkeyp-68b7.12
XM_043223952.1 mRNA downstream 48222 22833068 ~ 22870972 (+) True LOC122328301
XM_043222610.1 mRNA downstream 141467 22926313 ~ 22937828 (+) True pias4b
XM_043219179.1 mRNA downstream 153941 22938787 ~ 22946858 (+) True map2k2b
XM_043264291.1 mRNA downstream 174140 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA downstream 174141 22958987 ~ 22998516 (+) False tcf3a
TU21525 other upstream 85493 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 852004 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 919381 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1064536 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1298505 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 760260 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 952205 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1151075 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1298992 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1708592 24493438 ~ 24499685 (+) True G15065

Expression Profile