Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043219234.1 |
| length | 1247 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | ptf1a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056700.1 |
| NCBI id | CM032069.1 |
| chromosome length | 25613461 |
| location | 13902910 ~ 13904250 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0031017 | exocrine pancreas development | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0048699 | generation of neurons | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K09073 | PTF1A; pancreas-specific transcription factor 1a |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU17458 | lncRNA | upstream | 201584 | 13694319 ~ 13701326 (+) | True | G11779 |
| TU17389 | lncRNA | upstream | 435949 | 13315229 ~ 13466961 (+) | False | G11740 |
| TU17503 | lncRNA | downstream | 318 | 13904568 ~ 13917191 (+) | True | G11812 |
| TU17521 | lncRNA | downstream | 90541 | 13994791 ~ 13995373 (+) | True | G11823 |
| TU17513 | lncRNA | downstream | 98295 | 14002545 ~ 14068095 (+) | True | G11820 |
| TU17543 | lncRNA | downstream | 144467 | 14048717 ~ 14051620 (+) | True | G11836 |
| XR_006252504.1 | lncRNA | downstream | 187314 | 14091564 ~ 14098847 (+) | True | LOC122357607 |
| XM_043253272.1 | mRNA | upstream | 10225 | 13835218 ~ 13892685 (+) | True | dlgap1a |
| XM_043222213.1 | mRNA | upstream | 479747 | 13411296 ~ 13423163 (+) | True | LOC122326989 |
| XM_043263883.1 | mRNA | upstream | 604765 | 13259743 ~ 13298145 (+) | True | cdh18a |
| XM_043254324.1 | mRNA | upstream | 689784 | 13174143 ~ 13213126 (+) | True | cdh12a |
| XM_043253826.1 | mRNA | upstream | 756111 | 13127411 ~ 13146799 (+) | True | cdh10a |
| XM_043216932.1 | mRNA | downstream | 35020 | 13939270 ~ 13990501 (+) | True | si:ch211-207d6.2 |
| XM_043216938.1 | mRNA | downstream | 47083 | 13951333 ~ 13992324 (+) | False | si:ch211-207d6.2 |
| XM_043216945.1 | mRNA | downstream | 61547 | 13965797 ~ 13992324 (+) | False | si:ch211-207d6.2 |
| XM_043220658.1 | mRNA | downstream | 104833 | 14009083 ~ 14015895 (+) | True | htr5aa |
| XM_043256021.1 | mRNA | downstream | 131266 | 14035516 ~ 14039174 (+) | True | en2b |
| TU17265 | other | upstream | 1029765 | 12867983 ~ 12873145 (+) | False | rnf152 |
| TU17266 | other | upstream | 1029825 | 12867983 ~ 12873085 (+) | False | rnf152 |
| TU17183 | other | upstream | 1276523 | 12623823 ~ 12626387 (+) | True | LOC122358236 |
| XR_006247863.1 | other | upstream | 1621406 | 12281372 ~ 12281504 (+) | True | LOC122328950 |
| XR_006247873.1 | other | upstream | 1622251 | 12280590 ~ 12280659 (+) | True | LOC122328989 |
| TU17566 | other | downstream | 271114 | 14175364 ~ 14179615 (+) | True | G11854 |
| TU17573 | other | downstream | 271114 | 14175364 ~ 14179615 (+) | False | G11854 |
| XR_006252462.1 | other | downstream | 872072 | 14776322 ~ 14782977 (+) | False | ackr4a |
| XR_006252465.1 | other | downstream | 872072 | 14776322 ~ 14782704 (+) | False | ackr4a |
| TU18526 | other | downstream | 2362793 | 16267043 ~ 16268797 (+) | True | G12531 |
