RNA id: XM_043219247.1


Basic Information

Item Value
RNA id XM_043219247.1
length 4907
RNA type mRNA
GC content 0.48
exon number 20
gene id pask
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21462798 ~ 21474564 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaaaaattaaaacgaaacataactaatttaaaaagtagACAAACTAGGCCATGACTGAACGACTAAGAAAACTAGGTCACACGAGGCAGCAAAAATACTGCGTAACATAAACATTACCTTCTTTCTCCATAGAAACTACATCCCGCCCTTAATGAATTAAGCACCGCCCACTGATATCTTCTATTGGATTAACTCTCTGTCAATTTTAAAATTCCGTTTTTTCATTGGCTCTTCACCTCTCGTCAACTTATTTCGATTCCATACGCGCCAAACATTGTAGGCCGTGACATACTTAACGCAAATACTTCGAACCGACACTGTTTATGTCCACCGATAAATGAAAAATCCAGTTTGTTTGTAAgcaaaagtgtgttttgttaGTTATTGTTCAATCTAGCCGTCTAAAAGGAAAGAAGAACacccctctctctgtctccaaGGCAGCAGGCAGTAAACTGAAAGGACAGCAAGTGTGTTGTTGAAACAAGCAGTGTGCTGGCGCATCAGCGATGTGGCTGATGCACGGCCGGAGGAGCAGCCCCAGGGGCGACAGTGTTTGCGTTGCTGTTGATGACTGCAGTATCACCAGCGTGATGAAGACCGACTCCTTCTGCATGAACCAGTCCTTCCCCTCCGCGCGGAACTGCACTCTCAACCGCGTGGACGCATCAGGTGATTCTCACGTTGGTTCATCAGTGGCGGTGAGGAATCTTCAGATCTCTGATCTGCATGGCTCCCATCCTGTGTCTCCGTCATCGAATCATGGTTCTCCAGTATTGGAGAGCTCTCTGCTCAGACAGCTCATGTGTACTGCTCCAGAAAAAAGAGGCACAGCTCTCACCATCAACCCTAATAAAGCTGTCGTGTCCATTAATTGCACCACGTTACAGGTTTTGGATGCAAATGAACATGCTTGTAAGTTGTTTGAGTGTGGATACAGTGATTTGATCAGCCGGAAGCTGACTTCTCTCTTAAGAGCCAATCAGATGCTAGAGGAGGTCCTGAAGGAAGAGACTCTGGATTCTGACGGAAACCTAGTTCCTATTTCTGCAAAAGTGGTGAGCGCAGTGAGTTTGACAGGAGCTGAGTTTCCTGTGTCTGTGTGGCTTCAGATACCAGATCAGCCGCAGCAAAACCTAGAGCTCCTGCTGGAGCGAGTGGAGAGAATCACAGCACACGTGACGTTCACTCAAAATgGCGGAATCCTTAGTTGTGATGGCACTTTTGCCCATCTTTATGGTTACCACTCTGCTGAGGAGATGACTGGTCTGTCAATCATGTCTCTGATGCCTTCACTACAGATCCCCTTCCATTGCAGGACTCCCAAGGTGTTGCGTGTTCAGAGATTGCACGTGCAGGCCAGGTCTGGTTTGGTGGTGCCAGCATGTGTCCGTCTCCAGGCGGCTGTTTCCTGCGGAAGATCACCGCTGCACATTAAAGGATCGGCACATCCAGAACCTACTGATGGTTCACTTACAAGTTTGCGACAGGCAAACCAAACTAATTCAGGTGGTGTCCTGTCCCCCAGCGCAGATGTGCTGTACTCTGGgtcggtgtgtgtgtttgctcccAGTAGCTGCCTCCTGACACTTCAGCCCAACGGCACCATTCACAGCCTCAACAACCCCTTCAGCTCTCTGCTGCTCGGCTACAACAGCAGTCAGCTGCTCGGAAAGAATGTCACATACCTGATACCGGCTTTTTATGAGCGAGTTCGTGCGGCAGACCAAAGCGACCACCCTACAGCTTATCCCCATGATACATCCAGCCCCTCTGACAGCTGCAAAGACCCCTTTAGATGTTCCGCTAGTGCTAGCTGTTGCCCTGCTGATGCTACTGACATGCTCACAACTAAGGAAGATCAGGATACATGTATTAACTGGATGATATGTGCAGATCCAAACACAGTGCTTGCTGGTGACAGTGTGATGGTGCATATAGCCATGCGTAGGAGAGCAGGTCTTGGGAAAGGGAAAAGGATCTTCACTGGGACATGTGCTAAACTGGAGAAGAACGGCGTCCTATCAGTCATGACCTCTCCAGCTGTCACCTCCACACCACTGAATGGGTTAGATGAAACTACAGAGCTTTGTGAGCAGGTTGTGGATGTGACTGCTCGAGTCTCAGAGTCTGACTCTGCCAACTCCACCACCGCTCTGCTACAGACCTTTGCTCTGGTGGAGTCCCAGGAAGTCCACAAAACCTGCCCCTCCACTACTGTCTATCCTTATTGTGGCCCATCAGTGCAGATCTCTGGGCGAGATGCCTCCAAGGCTCCACACTCAAACCGTACAGAAGCTCCAGTAAAGTCCTGTGACTCTGTGCCACATTCAAAACCTCCCACAAAAGCCTGCCAGTGTTCAGAGAAAGCCCAGCTTCAGGACTCCAGCTTTGAGGTGATTTCTCTAGGCAGTGGGTCATCATCTGGGTTCTGTGAGCGGTTGGTGGGCGGCTCTGGTCCTGAAAAGTTAGATGAGTCTCAGCAAGGATGTCAACTAGCGGAATCGGGCAGCACCTTTCTGGATTTAAACTCCAATGGAGATGTCATTGTTCATGCCATGTCTGAGATGGACCTGAATGATAGTGTTGAGATTCAAAACTCAGATCTTAACCATTCGCTTACCTCATGTGACACCGCTGAGCTCCTGCGTACCCCTTCCCCCTTTGTTGTGGAGTCTGACCCTGAAGCAGAAGCTGAAATCTGCCCAGAGCAGGAGACAACACAAAAACCTGACCCATCAGCACAAGAGCGAGAACGACAAACAAGCCCTCAGCAGAAAGCTCAAGAGCAACTGCCGGAAAATCGTGTAATCAAACTTCGGGAACAGTGGAATTCCTTTTCGGAACATGTTGTCGGCCGTGTTCTGGATCTCCGTAAAGCTGGAATTCTGTTGCCAGGCGACACTCCGGCCACCTCCACTCCTAAGAAGGTGAAGGTGAACTCCTCCATTCCGGAGGGAAAGGTTCATGTGACCTGCTACAACAGAGAAGGAACACCAATCGaGGTGCAGTGTGATGTGCGCTGGGTGTCCCTGTCCAGCGGCAGCTCTCTGGTCTGTCTTTGGCTGAGTGGGAGTCATCTCCTGCTCCACCACCAGGAGGCGCCACAGAGCACAATGTCTCCCACAGTGAGGACAGGAGCCCCAGAACAGGAGACTTTTGCCTGCAGTCTCGCTGAGGCCATTCGTTCAGACGCCTTGCGCTCTTCTGTGGACTTGGAGCAGTCTGGAGCATGTGAGGGTTACTTTGAAGAAGACTATCGCCCGCTGCGCTCCATCGGAAAGGGAGCTTTCGGATTTGTCTGGCTCGCTGCTAGAAGGATAGATGAACAGGAAGTGGTTGTGAAGTTTATTAGGAAAAGCGCAGTGGTGAGTGAATGCTGGGTGGATGATCCTGATCTCGGCCAGGTCAGTCAAGAACTGGCCATACTGGTTCGTCTGCAACACTCCAATATTGTGAAGGTTTTGGAGGTGTTTGAGAATGAGCGATTCTTCCAAATGGTCATGGAGAAACATGGGGATGGGCTTGACCTGTTTGAGTTCATCGACATGCAGCCGAGACTGGATGAGCCTCTAGCGAGCTACATCTTCAGACAGTTGGTAGCTGCAGTGAGTTACCTGCGTGACAAAAGAGTGCTTCACAGGGACATAAAGGATGAAAACATAATCATAAACTCTAAATTCCATATCCGGCTGATTGACTTTGGCTCTGCTGCACTGCTGGAACCTGGAAAGCTCTTCTACACCTTCTGTGGCACTCTGGAGTACTGCTCCCCTGAGGTGCTTCAGGGAAACCCTTACGAGGGTCCAGAGCTGGAGATGTGGTCTCTAGGAGTGCTTTTATACACCCTACTCTTCAGTGAAAACCCCTTTTGCAGTGTGGAGGAAACCCTGCAGGCCCGGCTCAACCCTCCGTGCCAGATATCCACAGAGTTGTATGCACTGCTTTCTGGTCTTTTGCACCCAGTTGTTGATCAGAGAATGACTCTAGAGGAGCTCTTGGAGTCGCAGTGGACTCAGCAACCCATAAATCTAGCAGAGTACTCATGGGGAGAGGTCTTTCCCTCCAGCAATGAATTCACAGAACATGTGGATCCCAGCTCATGTGCGCACAAGCCAGACATCCTCTACCTGGACCCTGAAAACAGCTTGAGCACCTTAGAGGACACTCCTTtagaagatgaagatgaagaggaggatgaggagcaGAGGAGAACAATGGCTGCGCTGCAGTCTGAGCTGCTGAAATATCTCACCGATGAGTGAGGAACGGTTGTGAAAGAAGCGCTAATGCGTTCTGCTCAACTAATTATGACATTAAATCTAATGTCACCATGAGCACTAATGCGCACAATCTCTGCAGAACTCTCCGTCCACCTGCCGCTCTTCTCCTTGATGATACCAGTCCGACCAAAGAGCAAAAGGAAAGTGTGACTGGGAAATGAAGCCATCTGTGTTGCTAAGAAACGGCTTTATCTTTGTGTCTGGTGAAGGAATAGGAGTGTATTTATCAATGTGTTTTTTCCTTACCTTTCATggagtttttaaaacattgtattCTTTGATGTGGAATGTGCTGTTTGTTGTAATACTATGGTGTTGAGTGCCAGGATTGTCCTGTTAAAACATGTGGCACATGCACTAGACCAGTATGAAGGTCACCCaggctttaaaatgttatttatcctttaaagctttaaaagaattttagcttgctttttttttttttttttttttttttacctttttgaggaatgaatattttaattatttttaacatttatttatcctaagaataaattattagcatgatttcttttggtaattttggttttatttcaatttatgcaTAGGCTTTGTAAAGCCTCTATCAAATGTTAATGTCAATTAAAttcttcaataaaat

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08801 PASK; PAS domain containing serine/threonine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21010 lncRNA upstream 92299 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 116697 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 293911 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 309016 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 311662 21150658 ~ 21151136 (+) True G13994
TU21083 lncRNA downstream 58681 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 82280 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 242207 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 245354 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 336365 21810929 ~ 21812903 (+) True LOC122359002
XM_043219271.1 mRNA upstream 105 21423826 ~ 21462693 (+) True kcnab1b
XM_043254496.1 mRNA upstream 65258 21391118 ~ 21397540 (+) True zgc:152670
XM_043254497.1 mRNA upstream 65258 21391118 ~ 21397540 (+) False zgc:152670
XM_043218330.1 mRNA upstream 216798 21228639 ~ 21246000 (+) True nlrb5
XM_043252921.1 mRNA downstream 47 21474611 ~ 21477524 (+) True mterf4
XM_043252907.1 mRNA downstream 3095 21477659 ~ 21480866 (+) True LOC122354646
XM_043252934.1 mRNA downstream 6570 21481134 ~ 21482642 (+) True LOC122354659
XM_043217763.1 mRNA downstream 9215 21483779 ~ 21501610 (+) True klhl24a
XM_043217320.1 mRNA downstream 29636 21504200 ~ 21532284 (+) False yeats2
TU21005 other upstream 101090 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 101090 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 101090 21337682 ~ 21361708 (+) False G14211
TU20649 other upstream 297976 21163942 ~ 21164822 (+) True G13998
TU21079 other downstream 7112 21481676 ~ 21482318 (+) False LOC122354659
TU21151 other downstream 240791 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 386327 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 454183 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1216687 22691251 ~ 22695330 (+) True fcer1gl

Expression Profile